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ON189047.1__URA07152.1__Mallos_BL60044__00044

Bact-Vir

ON189047.1__URA07152.1__Mallos_BL60044__00044

Identity

Accession:
ON189047 ↗
Kingdom:
phage

Quality

80.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mesyanzhinovviridae› Mallosvirus› Xanthomonas_phage_Mallos

TaxID: 2939131

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 156-299
PDB
Domain cluster: rep: OQ594354.1__WEV89208.1__X__00021__D202-334
D2 high residues 353-489
PDB
Domain cluster: rep: OQ594354.1__WEV89208.1__X__00021__D202-334
D3 medium residues 4-113
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10983.14 best DUF2793 77.3 9.60e-22 79.1% 86.2%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.76 32.0 4.41e-01 70.0% 78.2%
3n3fA01 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.72 31.0 4.55e-01 70.0% 100.0%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3528795 3761.1.1.0 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.86 32.0 5.17e-01 70.0% 88.9%
3921177 3761.1.1.0 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.68 30.0 4.19e-01 76.4% 83.6%
D4 medium residues 306-335
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3l50A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.73 53.0 3.53e-01 86.7% 28.7%
6o38A02 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.63 51.0 3.78e-01 100.0% 37.0%
1byfA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.62 46.0 3.30e-01 100.0% 27.6%
5efrA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.61 44.0 3.45e-01 80.0% 95.9%
1z2qA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.57 41.0 3.27e-01 100.0% 36.9%
6o38A01 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.56 46.0 3.46e-01 100.0% 37.0%
3og5A01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.56 38.0 3.13e-01 90.0% 88.2%
2xocA01 3.30.40.140 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.55 41.0 3.31e-01 100.0% 52.6%
2iz4A02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 39.0 3.76e-01 86.7% 61.9%
3s40A01 3.40.50.10330 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 0.55 40.0 2.84e-01 100.0% 54.9%
2m85A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 37.0 3.25e-01 86.7% 44.6%
4kdcA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 37.0 2.41e-01 90.0% 84.3%
3htnB00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.54 45.0 2.95e-01 100.0% 37.4%
4k3cA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.54 37.0 3.03e-01 86.7% 90.2%
4bzaA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.53 40.0 3.10e-01 86.7% 88.5%
3hwuA00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.53 42.0 2.80e-01 100.0% 81.9%
2ghfA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.53 36.0 2.97e-01 100.0% 94.4%
1nubA01 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.52 36.0 2.89e-01 83.3% 29.3%
5c68A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 36.0 2.69e-01 86.7% 43.1%
4kyxA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.51 36.0 2.55e-01 90.0% 87.8%
1ze3D00 3.10.20.410 Alpha Beta › Roll › Ubiquitin-like (UB roll) › PapC, N-terminal domain 0.51 36.0 2.63e-01 86.7% 69.0%
7zhhA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 35.0 3.10e-01 100.0% 66.7%
5xfoA02 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.51 34.0 3.16e-01 90.0% 57.1%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.50 37.0 2.81e-01 86.7% 80.0%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3483120 387.1.1.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.67 55.0 4.41e-01 100.0% 92.3%
3604611 3070.1.1.0 ↗ a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.63 48.0 3.70e-01 100.0% 72.2%
3483119 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.62 49.0 4.61e-01 96.7% 95.0%
4532002 387.2.1.0 ↗ few secondary structure elements › omega toxin-like 0.62 47.0 4.59e-01 100.0% 97.4%
3517126 387.1.3.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Colipase-like 0.62 44.0 4.10e-01 76.7% 67.4%
3237389 387.1.5.24 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › Lustrin_cystein 0.60 44.0 4.18e-01 80.0% 65.0%
3704117 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.60 44.0 3.54e-01 100.0% 37.3%
3929491 387.1.7.1 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Evasin-3 knottin scaffold › Lustrin_cystein 0.60 43.0 3.97e-01 80.0% 68.9%
3521873 379.1.1.3 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.59 42.0 3.37e-01 90.0% 35.0%
3939489 387.1.3.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Colipase-like 0.59 41.0 4.14e-01 80.0% 82.4%
3397117 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.59 41.0 3.54e-01 90.0% 52.3%
3184465 261.1.1.0 ↗ a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain 0.58 45.0 2.93e-01 96.7% 73.8%
4544763 4212.1.1.1 ↗ beta barrels › FimD N-terminal domain-like › FimD N-terminal domain-like › FimD N-terminal domain-like › PapC_N 0.58 43.0 2.99e-01 96.7% 35.4%
3250496 388.1.1.0 ↗ few secondary structure elements › Huristasin-like › Huristasin-like › Huristasin-like 0.57 41.0 4.04e-01 86.7% 71.4%
3398357 2004.1.1.16 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.57 40.0 2.54e-01 86.7% 27.5%
5031967 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.56 42.0 3.03e-01 90.0% 90.9%
3945287 3121.1.1.0 ↗ a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain 0.56 42.0 3.19e-01 86.7% 85.6%
4183108 304.47.1.1 ↗ a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.56 42.0 2.77e-01 100.0% 47.8%
3791485 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.56 39.0 2.40e-01 86.7% 16.9%
3610594 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.56 40.0 2.29e-01 100.0% 46.7%
3637895 4961.1.1.1 ↗ a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 0.55 42.0 3.17e-01 100.0% 75.8%
3929292 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.54 40.0 3.57e-01 100.0% 54.0%
3306570 4961.1.1.1 ↗ a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 0.54 40.0 3.11e-01 100.0% 80.0%
3619396 2004.1.1.171 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Smg8_Smg9 0.54 39.0 2.27e-01 86.7% 16.2%
3231491 4961.1.1.1 ↗ a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 0.53 39.0 3.02e-01 100.0% 75.8%
3234730 387.1.7.1 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Evasin-3 knottin scaffold › Lustrin_cystein 0.53 36.0 3.64e-01 76.7% 74.3%
4995785 221.3.1.0 ↗ a+b two layers › beta-Grasp › Immunoglobulin-binding domains › Immunoglobulin-binding domains 0.53 37.0 3.33e-01 86.7% 100.0%
4025793 80.1.1.1 ↗ beta complex topology › HesB-like domain › HesB-like domain › HesB-like domain › Fe-S_biosyn 0.52 38.0 2.75e-01 100.0% 55.3%
3935996 59.1.1.9 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › EAF 0.52 37.0 2.76e-01 90.0% 85.7%
3975395 4212.1.1.1 ↗ beta barrels › FimD N-terminal domain-like › FimD N-terminal domain-like › FimD N-terminal domain-like › PapC_N 0.51 37.0 2.58e-01 86.7% 65.6%
3603406 4961.1.1.1 ↗ a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 0.51 38.0 3.35e-01 86.7% 90.9%
3320129 2.1.1.80 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.51 38.0 3.23e-01 100.0% 80.0%
3593749 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.51 37.0 3.09e-01 100.0% 41.3%
4937778 4961.1.1.1 ↗ a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 0.51 36.0 3.24e-01 86.7% 90.9%
3931908 209.1.1.0 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.51 37.0 2.64e-01 100.0% 28.1%
3489181 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.51 36.0 3.05e-01 96.7% 42.9%
3787071 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.50 40.0 2.73e-01 93.3% 55.7%