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ON189047.1__URA07176.1__Mallos_BL60068__00068

Bact-Vir

ON189047.1__URA07176.1__Mallos_BL60068__00068

Identity

Accession:
ON189047 ↗
Kingdom:
phage

Quality

94.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-62
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kxqA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.66 35.0 4.23e-01 77.2% 90.0%
2yshA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.61 33.0 3.87e-01 75.4% 81.8%
3po3S02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.61 42.0 3.81e-01 75.4% 54.1%
2mdiA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.61 35.0 3.60e-01 70.2% 55.4%
1pg5B02 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.57 39.0 3.97e-01 75.4% 71.9%
1y8fA00 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.57 38.0 3.99e-01 71.9% 78.4%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.53 37.0 4.05e-01 77.2% 87.5%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4944150 377.2.1.0 few secondary structure elements › Glucocorticoid receptor-like › C-terminal, Zn-finger domain of MutM-like DNA repair proteins › C-terminal, Zn-finger domain of MutM-like DNA repair proteins 0.74 45.0 5.41e-01 77.2% 100.0%
4289796 375.1.1.60 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR 0.71 43.0 4.13e-01 78.9% 53.8%
3503021 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.69 43.0 5.18e-01 78.9% 100.0%
4934110 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 49.0 4.61e-01 75.4% 84.3%
4276264 375.8.1.5 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › PF26372 0.69 45.0 5.02e-01 80.7% 86.7%
4963113 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 49.0 5.22e-01 80.7% 92.0%
3524515 386.1.1.1 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.66 45.0 4.88e-01 77.2% 93.2%
5030452 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 45.0 5.02e-01 94.7% 93.3%
4948153 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 40.0 3.80e-01 75.4% 51.4%
3737071 375.1.1.7 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.63 42.0 4.21e-01 75.4% 67.8%
4975269 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 42.0 4.35e-01 75.4% 83.6%
4278171 375.1.1.41 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Methyltransf_13 0.59 43.0 4.30e-01 78.9% 95.0%
4954491 375.1.1.135 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Lar_restr_allev 0.57 40.0 4.08e-01 77.2% 76.4%
5043504 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 41.0 4.28e-01 94.7% 90.0%
3447043 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 33.0 3.80e-01 73.7% 100.0%
3588379 375.1.1.90 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ISL3 0.54 45.0 4.30e-01 89.5% 87.7%
D2 high residues 77-142
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11672.14 best DUF3268 32.9 9.40e-08 92.4% 46.7%
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bduA02 1.10.150.340 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain 0.63 42.0 4.03e-01 75.8% 60.8%
1e1dA02 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.63 56.0 5.17e-01 100.0% 83.3%
1k82A02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.63 55.0 4.46e-01 97.0% 56.9%
4gc5A02 1.10.8.100 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain 0.63 51.0 4.67e-01 92.4% 77.8%
4m0mA03 1.20.1270.430 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.63 55.0 5.26e-01 100.0% 87.3%
3w0fA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.62 53.0 4.19e-01 95.5% 50.0%
5gkoA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 49.0 3.39e-01 92.4% 58.0%
1tdzA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 53.0 4.22e-01 97.0% 52.2%
6ifsB02 1.10.8.100 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain 0.61 48.0 4.70e-01 86.4% 95.8%
2f8lA01 1.10.150.470 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.61 40.0 3.86e-01 100.0% 56.8%
2ze7A02 1.10.287.890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.61 49.0 4.23e-01 87.9% 74.5%
7zhgO01 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 51.0 5.11e-01 93.9% 98.5%
4mb7A02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.60 52.0 4.07e-01 98.5% 48.3%
2cufA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 37.0 3.61e-01 84.8% 55.6%
4nooB00 1.10.8.1160 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.59 50.0 4.56e-01 100.0% 83.2%
5xdcB01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.58 38.0 3.17e-01 72.7% 38.7%
2lkiA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.58 41.0 3.87e-01 75.8% 97.6%
1wmgA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.58 47.0 4.37e-01 95.5% 87.8%
1k3xA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.58 47.0 3.90e-01 93.9% 54.3%
3rssA02 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.57 48.0 3.26e-01 100.0% 86.6%
1zq9A02 1.10.8.480 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.57 46.0 4.06e-01 89.4% 92.9%
4neoA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.57 41.0 3.79e-01 74.2% 62.7%
8cdaC01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.57 39.0 3.22e-01 71.2% 48.7%
2d5rA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 48.0 3.32e-01 100.0% 68.7%
2o6lB00 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.56 48.0 3.68e-01 100.0% 75.3%
5bykA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 42.0 2.92e-01 83.3% 28.7%
3iieB03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.55 45.0 4.16e-01 89.4% 74.1%
3v76A03 1.10.8.260 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › HI0933 insert domain-like 0.55 42.0 4.34e-01 83.3% 93.4%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 37.0 3.51e-01 72.7% 71.6%
2i7uA00 6.10.250.1010 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.54 37.0 3.80e-01 71.2% 75.8%
3otgA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.54 46.0 3.51e-01 100.0% 73.1%
1te2A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 38.0 3.72e-01 100.0% 69.4%
4ldpA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.53 44.0 3.46e-01 98.5% 73.0%
3m9vA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.53 41.0 3.35e-01 84.8% 54.3%
3ag7A00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.51 40.0 3.54e-01 89.4% 56.2%
3bh1A03 3.40.140.40 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain 0.51 43.0 3.42e-01 100.0% 67.1%
1bgfA00 1.10.532.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain 0.51 40.0 3.36e-01 90.9% 50.8%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3943525 829.1.1.0 a+b duplicates or obligate multimers › NinB › NinB › NinB 0.72 63.0 5.19e-01 100.0% 88.3%
4997208 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.65 55.0 3.62e-01 97.0% 21.4%
4929481 102.2.1.0 alpha arrays › HhH/H2TH › H2TH › H2TH 0.64 54.0 5.12e-01 93.9% 86.3%
5034089 102.2.1.3 alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.64 54.0 4.40e-01 93.9% 52.8%
4994521 102.2.1.3 alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.62 54.0 4.45e-01 97.0% 55.8%
3555324 102.2.1.0 alpha arrays › HhH/H2TH › H2TH › H2TH 0.62 50.0 4.34e-01 92.4% 63.6%
4934443 102.2.1.3 alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.62 52.0 4.09e-01 93.9% 45.0%
4499455 633.5.1.1 alpha bundles › Bromodomain-like › LemA-like › LemA-like › LemA 0.62 53.0 4.07e-01 100.0% 43.8%
5069452 102.2.1.3 alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.62 53.0 4.27e-01 97.0% 52.3%
5062453 102.2.1.0 alpha arrays › HhH/H2TH › H2TH › H2TH 0.61 52.0 4.25e-01 95.5% 51.2%
4042537 102.2.1.0 alpha arrays › HhH/H2TH › H2TH › H2TH 0.61 53.0 4.17e-01 97.0% 50.0%
5039312 102.2.1.0 alpha arrays › HhH/H2TH › H2TH › H2TH 0.61 51.0 4.83e-01 93.9% 81.2%
3891805 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.61 40.0 3.94e-01 89.4% 62.9%
4532012 102.2.1.4 alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH 0.60 51.0 4.69e-01 93.9% 81.2%
2549596 6091.1.1.2 alpha bundles › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase › SpGH101_helical 0.60 51.0 4.93e-01 98.5% 93.3%
1180306 632.20.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › TsiV3 protein › TsiV3 protein › TsiV3 0.59 50.0 4.56e-01 100.0% 83.2%
5065357 102.2.1.0 alpha arrays › HhH/H2TH › H2TH › H2TH 0.59 47.0 4.56e-01 89.4% 89.3%
4928704 102.2.1.0 alpha arrays › HhH/H2TH › H2TH › H2TH 0.59 49.0 4.66e-01 95.5% 86.3%
3699849 102.2.1.0 alpha arrays › HhH/H2TH › H2TH › H2TH 0.58 48.0 4.43e-01 92.4% 80.0%
3353640 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.58 35.0 3.52e-01 93.9% 55.7%
5044962 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.58 49.0 4.45e-01 100.0% 77.9%
5081513 102.2.1.0 alpha arrays › HhH/H2TH › H2TH › H2TH 0.58 49.0 4.08e-01 97.0% 69.2%
3551587 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.58 44.0 3.97e-01 95.5% 60.0%
3269634 192.17.1.0 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.58 36.0 3.84e-01 100.0% 71.7%
4313858 102.2.1.0 alpha arrays › HhH/H2TH › H2TH › H2TH 0.58 45.0 4.48e-01 87.9% 91.4%
4080592 166.1.1.1 alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.57 45.0 4.09e-01 86.4% 67.8%
4646390 102.2.1.6 alpha arrays › HhH/H2TH › H2TH › H2TH › HI0933_like_1st 0.57 42.0 4.11e-01 98.5% 73.3%
3786420 102.2.1.0 alpha arrays › HhH/H2TH › H2TH › H2TH 0.56 44.0 3.86e-01 87.9% 94.3%
3939577 7516.1.1.33 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › DUF273 0.56 48.0 3.43e-01 100.0% 79.5%
3503207 102.2.1.0 alpha arrays › HhH/H2TH › H2TH › H2TH 0.56 44.0 3.97e-01 89.4% 92.9%
3168742 102.2.1.1 alpha arrays › HhH/H2TH › H2TH › H2TH › RrnaAD 0.56 44.0 3.90e-01 89.4% 93.2%
4648653 102.2.1.0 alpha arrays › HhH/H2TH › H2TH › H2TH 0.55 45.0 4.38e-01 93.9% 86.5%
3659116 212.1.1.48 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › PF28653 0.55 46.0 3.09e-01 90.9% 31.8%
3609693 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 42.0 2.52e-01 81.8% 16.3%
60261 166.1.1.0 alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C 0.55 43.0 3.91e-01 89.4% 63.2%
5016239 102.2.1.0 alpha arrays › HhH/H2TH › H2TH › H2TH 0.51 41.0 3.65e-01 98.5% 91.8%