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ON189048.1__URA07254.1__Seregon_BL70059__00059

Bact-Vir

ON189048.1__URA07254.1__Seregon_BL70059__00059

Identity

Accession:
ON189048 ↗
Kingdom:
phage

Quality

81.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-65
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2imlA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.69 56.0 4.41e-01 92.2% 50.4%
3fgtA01 2.10.70.60 Mainly Beta › Ribbon › Complement Module; domain 1 › Phospholipase B-like, domain 1 0.65 41.0 4.07e-01 100.0% 58.2%
1agjA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 52.0 3.92e-01 100.0% 37.3%
2arzA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 51.0 3.79e-01 96.1% 40.0%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.62 49.0 4.18e-01 100.0% 51.6%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 53.0 3.85e-01 100.0% 62.9%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 51.0 4.25e-01 98.0% 86.3%
3kflA02 2.170.220.10 Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › 0.60 41.0 3.27e-01 74.5% 98.3%
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 52.0 4.23e-01 96.1% 56.4%
1btkA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 47.0 3.51e-01 98.0% 68.1%
3pfmA00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.58 45.0 2.98e-01 90.2% 94.2%
2dtcA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 50.0 3.89e-01 100.0% 79.3%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 47.0 3.59e-01 98.0% 56.2%
4kc7A02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.57 49.0 4.04e-01 100.0% 93.9%
1cqxA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 46.0 3.73e-01 100.0% 64.0%
3ic8A01 3.40.30.110 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.56 44.0 3.11e-01 92.2% 31.1%
2x8fA02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.56 48.0 3.96e-01 100.0% 93.7%
2ec1A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 44.0 3.50e-01 96.1% 81.4%
1kutA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 45.0 3.46e-01 100.0% 70.7%
1jmxA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 40.0 3.11e-01 82.4% 69.4%
3kk7A01 3.30.420.400 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.54 48.0 3.75e-01 100.0% 69.7%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 43.0 4.21e-01 100.0% 100.0%
3i3lA02 3.30.390.160 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.52 37.0 2.92e-01 78.4% 56.0%
1c8zA00 3.20.90.10 Alpha Beta › Alpha-Beta Barrel › Tubby Protein; Chain A › Tubby Protein; Chain A 0.52 41.0 2.75e-01 98.0% 44.2%
4ksnA00 6.20.250.80 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.52 44.0 4.13e-01 100.0% 92.3%
3s83A00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.51 39.0 2.62e-01 90.2% 87.1%
3zxjA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 35.0 2.27e-01 78.4% 13.1%
2mm0A00 2.10.70.110 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.51 37.0 3.60e-01 90.2% 100.0%
3sy8C02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.51 38.0 2.56e-01 90.2% 92.9%
3hv8A00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.50 39.0 2.60e-01 90.2% 94.2%
6l4lA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.50 40.0 3.28e-01 100.0% 96.6%
2pn1A03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.50 41.0 3.18e-01 94.1% 96.7%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3259583 220.1.1.86 beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.70 59.0 5.22e-01 100.0% 91.3%
4968082 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.68 57.0 3.88e-01 100.0% 34.1%
3436556 220.1.1.86 beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.68 57.0 5.15e-01 100.0% 97.3%
3957374 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.66 57.0 5.18e-01 98.0% 84.3%
4960931 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.66 53.0 3.73e-01 94.1% 46.1%
3972374 219.1.1.96 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_i_TM 0.65 53.0 4.12e-01 96.1% 42.4%
5029583 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.65 53.0 3.96e-01 98.0% 37.9%
5029143 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.65 52.0 3.83e-01 96.1% 35.0%
5035935 219.1.1.26 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Phytochelatin 0.63 52.0 3.70e-01 100.0% 41.6%
3673860 5.3.1.2 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.63 37.0 3.08e-01 70.6% 31.1%
5034820 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.62 52.0 3.64e-01 100.0% 30.5%
3269109 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.61 49.0 3.48e-01 100.0% 31.8%
3831275 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.61 51.0 3.17e-01 100.0% 100.0%
5061147 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 50.0 4.23e-01 100.0% 67.4%
3472532 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 48.0 3.65e-01 98.0% 86.9%
5027758 616.1.1.0 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.59 42.0 3.06e-01 78.4% 51.0%
5062120 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 47.0 3.88e-01 96.1% 72.4%
4932189 4076.2.1.6 a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › DUF1922 0.58 47.0 4.25e-01 98.0% 65.7%
3802153 868.1.1.11 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › DUF7903 0.58 46.0 3.13e-01 100.0% 36.3%
3822901 5.1.3.155 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_2 0.58 49.0 3.05e-01 100.0% 94.5%
5041381 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.58 46.0 3.57e-01 100.0% 99.3%
4995677 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 48.0 4.72e-01 100.0% 89.1%
3932815 11.1.1.53 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.55 46.0 3.30e-01 96.1% 61.3%
3677170 868.1.1.11 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › DUF7903 0.55 44.0 2.89e-01 100.0% 32.7%
3510441 2002.5.1.1 a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.55 42.0 2.78e-01 90.2% 90.0%
None 0.55 48.0 4.38e-01 94.1% 76.9%
3546863 922.1.1.7 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_ADAMTS 0.54 46.0 4.25e-01 94.1% 76.9%
3663192 868.1.1.11 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › DUF7903 0.54 43.0 3.06e-01 100.0% 57.1%
3224710 389.1.1.0 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.54 44.0 4.01e-01 98.0% 89.3%
3979842 4.1.1.45 beta barrels › SH3 › SH3 › SH3 › DUF903 0.54 45.0 4.47e-01 100.0% 94.5%
3266008 207.4.1.2 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › CAP_C 0.54 36.0 2.47e-01 78.4% 17.1%
4054365 2002.5.1.1 a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.53 41.0 2.74e-01 90.2% 92.7%
3967205 2002.5.1.1 a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.53 42.0 2.84e-01 100.0% 89.0%
5059830 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.53 44.0 3.79e-01 100.0% 74.4%
3983390 2002.5.1.1 a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.53 44.0 2.77e-01 94.1% 81.5%
3232739 11.1.1.408 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF281 0.53 40.0 3.42e-01 86.3% 73.3%
3335404 4.1.1.350 beta barrels › SH3 › SH3 › SH3 › DUF7589 0.53 42.0 3.28e-01 100.0% 88.1%
3866247 252.1.1.1 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.52 34.0 3.03e-01 72.5% 45.7%
3939950 11.1.1.532 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C6 0.52 39.0 3.51e-01 88.2% 76.2%
1140806 2002.5.1.1 a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.51 41.0 2.66e-01 92.2% 88.1%
3981350 2002.5.1.1 a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.51 41.0 2.66e-01 94.1% 84.0%
3520927 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.51 40.0 2.80e-01 100.0% 24.5%
2520636 2002.5.1.1 a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.50 39.0 2.58e-01 92.2% 89.1%
3839369 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.50 43.0 3.78e-01 100.0% 66.3%
D2 high residues 68-152
PDB
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.59 43.0 4.24e-01 76.5% 78.0%
3s9cA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 42.0 3.78e-01 75.3% 69.2%
4f4oC02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 41.0 3.43e-01 76.5% 65.6%
1a6cA02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.56 41.0 3.34e-01 77.6% 93.9%
4rdlA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.55 39.0 3.64e-01 72.9% 100.0%
3h7oB01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 38.0 3.51e-01 72.9% 71.7%
2olgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 38.0 3.49e-01 74.1% 73.9%
1buiA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 38.0 3.44e-01 76.5% 69.0%
1si5H01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 37.0 3.43e-01 76.5% 67.2%
3fruA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.51 28.0 2.25e-01 92.9% 26.0%
2d73A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 39.0 3.60e-01 85.9% 83.2%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3954254 4.1.1.387 beta barrels › SH3 › SH3 › SH3 › SH3_Rv0428c 0.64 45.0 4.96e-01 74.1% 100.0%
4989205 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.60 43.0 3.36e-01 75.3% 82.8%
3723768 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 42.0 4.13e-01 74.1% 96.7%
3278461 219.1.1.36 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C92 0.59 46.0 3.78e-01 87.1% 53.5%
3686913 101.1.2.115 alpha arrays › HTH › HTH › winged helix domain › CDC27 0.55 42.0 3.51e-01 82.4% 51.3%
4204046 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.54 39.0 3.59e-01 77.6% 80.0%
5083482 12.1.1.22 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › GH97_C 0.53 37.0 3.56e-01 71.8% 80.0%
4676513 219.1.1.76 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.53 38.0 3.02e-01 75.3% 91.7%
4989873 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.52 38.0 3.44e-01 77.6% 97.5%
4545857 71.1.1.2 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.52 39.0 3.07e-01 81.2% 89.2%
3715942 75.1.1.1 beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like › Pro_isomerase 0.52 40.0 3.07e-01 85.9% 74.0%
3577792 10.7.1.0 beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.51 36.0 3.31e-01 75.3% 76.7%
3529423 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 38.0 3.42e-01 82.4% 98.5%
3448678 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.50 34.0 2.91e-01 70.6% 60.0%
184563 12.1.1.22 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › GH97_C 0.50 39.0 3.57e-01 85.9% 81.0%