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ON191532.1__URG17519.1__Mbo4_029__00029

Bact-Vir

ON191532.1__URG17519.1__Mbo4_029__00029

Identity

Accession:
ON191532 ↗
Kingdom:
phage

Quality

74.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mboquatrovirus› Rhodococcus_phage_Mbo4

TaxID: 2936912

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 134-214
PDB
Domain cluster: rep: NC_054726.1__YP_010059639.1__KHQ86_gp136__00163__D59-136
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05305.20 best DUF732 45.3 1.30e-11 93.8% 94.4%
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2q0iA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.78 60.0 4.00e-01 81.5% 47.7%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.73 60.0 5.62e-01 97.5% 73.2%
3iuoA00 1.10.10.1390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ 0.70 50.0 4.55e-01 75.3% 98.2%
2whnA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.69 50.0 4.48e-01 75.3% 79.1%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.66 51.0 4.77e-01 81.5% 73.7%
2x3mA00 1.25.40.670 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.66 57.0 4.63e-01 100.0% 71.1%
1x4qA01 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.66 50.0 5.24e-01 93.8% 94.4%
2cvzA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.66 48.0 4.11e-01 77.8% 92.4%
7ccmB01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.65 51.0 4.28e-01 86.4% 53.1%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 50.0 5.11e-01 88.9% 84.6%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.64 50.0 4.57e-01 84.0% 93.5%
3on3B00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.64 55.0 4.34e-01 96.3% 60.0%
4a18Q01 1.10.10.1760 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L36 0.64 46.0 4.93e-01 90.1% 88.4%
3mw6B00 1.10.1710.10 Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain 0.63 47.0 4.53e-01 80.2% 91.5%
1j1vA00 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.63 43.0 4.10e-01 70.4% 67.0%
6p6jB02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 45.0 3.22e-01 100.0% 26.4%
1mzbA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 49.0 4.92e-01 100.0% 87.8%
1puoB00 1.20.920.50 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.61 51.0 4.29e-01 95.1% 63.4%
1txuA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.59 49.0 4.69e-01 93.8% 91.5%
2es9A00 1.20.1290.30 Mainly Alpha › Up-down Bundle › AhpD-like › 0.58 39.0 3.70e-01 77.8% 57.0%
2k8oA00 1.20.5.2120 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.57 30.0 3.43e-01 71.6% 66.7%
1rykA00 1.10.1470.10 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ 0.57 42.0 4.48e-01 92.6% 94.2%
3h37A03 1.20.58.1960 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 47.0 4.14e-01 97.5% 85.9%
3mc1A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 39.0 4.22e-01 95.1% 89.6%
3frwB00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.54 46.0 4.34e-01 91.4% 80.2%
3bjdA01 1.10.1240.20 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain 0.54 39.0 3.85e-01 77.8% 76.1%
3qitB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 47.0 3.21e-01 97.5% 65.0%
2b4lA02 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.52 45.0 3.63e-01 95.1% 69.4%
3au4A01 1.25.40.530 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain 0.51 44.0 3.39e-01 97.5% 64.8%
3l2pA01 1.10.3260.10 Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain 0.51 40.0 3.10e-01 87.7% 58.6%
3p2mA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 45.0 3.09e-01 98.8% 58.4%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3954237 532.2.1.16 ↗ alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › DUF732 0.95 85.0 8.60e-01 96.3% 95.0%
3955500 101.1.2.655 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF732 0.89 78.0 8.01e-01 96.3% 97.4%
3672635 101.1.1.295 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 0.85 59.0 6.18e-01 75.3% 77.3%
4501343 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.82 54.0 6.45e-01 70.4% 100.0%
1566530 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.77 52.0 5.28e-01 70.4% 80.2%
5038818 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.74 61.0 4.17e-01 88.9% 51.4%
3932714 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.74 52.0 5.03e-01 72.8% 73.3%
5035865 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.74 56.0 3.89e-01 81.5% 34.7%
3274434 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.73 51.0 5.06e-01 72.8% 77.6%
4994386 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.73 59.0 3.96e-01 87.7% 48.2%
4290626 101.1.21.0 ↗ alpha arrays › HTH › HTH › HTH in T7 RNA polymerase 0.73 64.0 4.85e-01 100.0% 86.5%
4438504 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.72 49.0 5.34e-01 81.5% 86.2%
167309 592.2.1.3 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like › Nab2 0.72 59.0 5.48e-01 95.1% 70.5%
1169399 101.35.1.2 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Lipoprotein_Ltp 0.72 45.0 5.35e-01 88.9% 100.0%
3248091 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.71 50.0 4.97e-01 72.8% 77.6%
3966077 101.26.1.1 ↗ alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › Tex_N 0.71 54.0 5.72e-01 95.1% 94.3%
4034503 101.26.1.1 ↗ alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › Tex_N 0.71 50.0 5.46e-01 93.8% 92.3%
4964648 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.71 50.0 3.57e-01 74.1% 28.1%
5012836 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.70 55.0 3.82e-01 85.2% 51.3%
3283124 101.1.2.78 ↗ alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.70 61.0 5.58e-01 98.8% 81.8%
4390290 101.1.1.13 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.70 49.0 5.30e-01 77.8% 90.8%
4978129 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.70 50.0 3.14e-01 95.1% 14.9%
4951565 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.70 60.0 4.62e-01 96.3% 42.8%
3714445 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.68 59.0 5.70e-01 93.8% 100.0%
4942943 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.67 55.0 4.90e-01 100.0% 63.6%
147066 3275.1.1.1 ↗ alpha complex topology › Hypothetical protein ORF239 › Hypothetical protein ORF239 › Hypothetical protein ORF239 › ORF239-like 0.66 57.0 4.63e-01 100.0% 71.1%
5025549 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 44.0 4.82e-01 70.4% 96.9%
4937752 5050.1.1.87 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › LPG_synthase_TM 0.65 57.0 4.20e-01 98.8% 64.4%
4271175 101.1.2.498 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25870 0.64 51.0 4.30e-01 85.2% 52.6%
4839189 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.64 48.0 4.14e-01 77.8% 60.7%
3987909 138.1.1.9 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA_pol3_delta_C 0.64 53.0 4.44e-01 88.9% 62.2%
3886349 195.1.1.0 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like 0.64 55.0 4.48e-01 100.0% 62.4%
4011370 509.1.1.0 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.64 55.0 5.25e-01 97.5% 85.3%
3269593 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.63 42.0 4.24e-01 75.3% 68.8%
5045542 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.63 54.0 4.12e-01 97.5% 56.5%
4946659 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.63 47.0 4.35e-01 96.3% 60.9%
3192660 509.1.1.9 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH_ZNF598 0.63 54.0 5.16e-01 97.5% 85.3%
5074415 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.62 53.0 4.13e-01 97.5% 57.3%
3201265 509.1.1.9 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH_ZNF598 0.62 53.0 4.98e-01 97.5% 80.0%
4523215 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.60 47.0 4.82e-01 93.8% 87.5%
5067099 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.60 49.0 4.21e-01 100.0% 55.6%
5019429 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.59 46.0 3.06e-01 84.0% 54.6%
3886268 3919.1.1.0 ↗ alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 0.59 51.0 4.67e-01 97.5% 76.4%
3709633 509.1.1.9 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH_ZNF598 0.58 46.0 4.37e-01 95.1% 73.0%
4506746 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.57 50.0 3.79e-01 96.3% 74.7%
3929097 4163.1.1.0 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like 0.53 39.0 3.38e-01 77.8% 77.7%
3547079 150.3.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine 0.53 46.0 3.92e-01 95.1% 70.8%
3410327 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 43.0 4.22e-01 95.1% 92.2%
3695024 7579.1.1.59 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › LIDHydrolase 0.50 43.0 2.89e-01 100.0% 29.6%
4999401 4995.1.1.0 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like 0.50 41.0 4.10e-01 93.8% 91.8%