Back to structures

ON286972.1__USL83507.1__A4_431__00186

Bact-Vir

ON286972.1__USL83507.1__A4_431__00186

Identity

Accession:
ON286972 ↗
Kingdom:
phage

Quality

86.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-100
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.88 65.0 6.36e-01 100.0% 72.1%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.85 69.0 7.03e-01 100.0% 88.7%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.84 72.0 5.71e-01 100.0% 48.7%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.84 69.0 6.30e-01 100.0% 68.8%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.84 62.0 6.52e-01 100.0% 87.5%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.83 62.0 6.43e-01 100.0% 84.7%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 59.0 6.61e-01 96.8% 98.0%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 69.0 5.71e-01 100.0% 54.6%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 60.0 6.08e-01 100.0% 82.3%
3meuB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 63.0 6.03e-01 100.0% 77.0%
3ptaA04 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.76 69.0 4.86e-01 100.0% 46.2%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.73 55.0 5.71e-01 92.1% 91.1%
1vwxZ00 2.30.30.770 Mainly Beta › Roll › SH3 type barrels. › 0.69 62.0 4.80e-01 100.0% 56.3%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 55.0 5.49e-01 100.0% 95.3%
2vqeE01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 43.0 4.31e-01 74.6% 79.7%
6qp9B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 51.0 3.11e-01 96.8% 38.6%
4gxbA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 50.0 4.33e-01 95.2% 64.4%
3irbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 44.0 4.33e-01 81.0% 100.0%
1ae2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 43.0 3.92e-01 77.8% 97.7%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.59 44.0 3.84e-01 81.0% 100.0%
2dt4A00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.59 51.0 3.99e-01 100.0% 48.3%
3hwuA00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.58 51.0 3.95e-01 100.0% 47.2%
3pnrA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 48.0 3.37e-01 100.0% 88.7%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.58 47.0 4.22e-01 100.0% 61.3%
2qggA02 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.58 50.0 4.64e-01 100.0% 78.3%
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.57 46.0 3.21e-01 96.8% 31.7%
2lwyA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.56 46.0 3.70e-01 95.2% 80.4%
2d42A02 3.10.450.380 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 45.0 4.50e-01 100.0% 89.2%
7rskA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 38.0 3.24e-01 73.0% 95.4%
1g19A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 44.0 3.17e-01 95.2% 82.6%
3kztA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 46.0 3.71e-01 96.8% 82.6%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.54 45.0 3.45e-01 98.4% 91.3%
1ohfA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.53 44.0 3.57e-01 100.0% 48.9%
4hj1A01 2.60.98.50 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › 0.53 43.0 3.34e-01 96.8% 92.2%
4ywzB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 42.0 3.32e-01 90.5% 83.6%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 39.0 3.21e-01 82.5% 80.0%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 45.0 3.77e-01 100.0% 75.2%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 45.0 3.80e-01 98.4% 56.9%
4xsgB00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.52 36.0 2.59e-01 73.0% 52.2%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.52 44.0 3.82e-01 100.0% 58.7%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 36.0 3.00e-01 73.0% 78.9%
1vqwA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 44.0 2.81e-01 96.8% 47.8%
2bi0A01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 40.0 3.21e-01 93.7% 90.2%
1jkfA03 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 36.0 3.73e-01 87.3% 81.7%
1v89A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 45.0 3.68e-01 100.0% 72.0%
1qxfA00 2.20.25.100 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Ribosomal protein S27 0.51 39.0 4.11e-01 100.0% 89.7%
4fvdA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 43.0 3.77e-01 93.7% 86.2%
3qooA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 40.0 3.29e-01 93.7% 79.9%
3gm8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 39.0 3.35e-01 85.7% 90.5%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3570368 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.87 68.0 5.72e-01 100.0% 52.0%
3905549 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.85 66.0 5.50e-01 100.0% 49.5%
3851361 4.1.1.78 beta barrels › SH3 › SH3 › SH3 › TTD 0.82 75.0 6.22e-01 100.0% 66.7%
3750522 4.1.1.218 beta barrels › SH3 › SH3 › SH3 › PWP3A-B_N 0.81 68.0 5.49e-01 100.0% 50.9%
145843 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.81 69.0 5.71e-01 100.0% 54.6%
3485761 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 74.0 5.22e-01 100.0% 46.1%
2157301 4.1.1.78 beta barrels › SH3 › SH3 › SH3 › TTD 0.79 70.0 6.65e-01 100.0% 82.2%
3931055 4.1.1.311 beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.79 69.0 6.54e-01 100.0% 81.3%
3482360 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 72.0 6.29e-01 100.0% 80.0%
3937478 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 66.0 5.45e-01 100.0% 53.6%
3473981 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.76 70.0 5.50e-01 100.0% 64.8%
3645842 4.1.1.162 beta barrels › SH3 › SH3 › SH3 › DUF502 0.76 65.0 6.02e-01 100.0% 75.0%
3691144 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.74 68.0 6.56e-01 100.0% 91.4%
3482706 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 66.0 4.81e-01 100.0% 51.2%
3253266 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 66.0 5.53e-01 100.0% 61.9%
3177469 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 63.0 6.14e-01 100.0% 85.7%
3342228 4.25.1.0 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.73 65.0 4.74e-01 100.0% 80.0%
3465486 4.25.1.0 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.73 65.0 4.70e-01 100.0% 80.6%
3253267 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 65.0 5.87e-01 100.0% 72.9%
3881192 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 64.0 4.71e-01 100.0% 40.0%
3631313 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.72 64.0 4.53e-01 100.0% 38.4%
3827585 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.71 57.0 4.83e-01 87.3% 93.3%
3997130 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 65.0 5.54e-01 100.0% 82.0%
4017099 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.71 63.0 4.30e-01 100.0% 33.8%
3284813 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 62.0 5.87e-01 100.0% 96.0%
3439789 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.70 63.0 4.50e-01 100.0% 54.3%
3464303 4.25.1.0 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.70 62.0 4.65e-01 100.0% 82.6%
1421013 4.1.1.22 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L27e 0.69 63.0 4.80e-01 100.0% 54.3%
3597659 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 63.0 4.86e-01 100.0% 56.7%
3447797 4.25.1.0 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.69 62.0 4.67e-01 100.0% 77.3%
3967986 4.7.1.2 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.69 58.0 5.33e-01 100.0% 72.5%
3488000 4.1.1.22 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L27e 0.69 62.0 4.72e-01 100.0% 53.1%
3468906 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 54.0 4.92e-01 87.3% 77.6%
3664043 5.1.2.21 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DUF295 0.68 58.0 3.75e-01 96.8% 32.2%
3811281 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 54.0 4.88e-01 87.3% 78.8%
4303967 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 59.0 5.23e-01 98.4% 90.0%
3297966 4.25.1.2 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.66 57.0 4.67e-01 100.0% 75.8%
4109046 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 56.0 5.13e-01 100.0% 82.4%
3658595 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.65 51.0 5.01e-01 87.3% 85.7%
3965228 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 52.0 4.51e-01 88.9% 93.7%
5048974 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 55.0 4.57e-01 100.0% 56.4%
4968081 375.1.1.299 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.63 47.0 4.93e-01 93.7% 92.7%
3207081 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.61 51.0 5.12e-01 98.4% 95.4%
3221045 243.1.1.75 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26530 0.61 49.0 4.03e-01 96.8% 80.7%
3759486 330.1.1.2 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.61 45.0 4.21e-01 81.0% 67.5%
3662984 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 48.0 4.37e-01 87.3% 87.1%
3400775 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 48.0 3.93e-01 90.5% 96.8%
4984069 4111.1.1.2 a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.60 52.0 4.08e-01 100.0% 49.3%
3970513 1.1.7.87 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.59 48.0 4.38e-01 100.0% 67.1%
3677761 4111.1.1.2 a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.58 51.0 4.11e-01 100.0% 52.0%
3699761 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.58 47.0 3.37e-01 98.4% 47.1%
3225768 883.1.1.0 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.58 49.0 3.70e-01 100.0% 59.4%
3465961 304.102.1.6 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.57 43.0 3.08e-01 95.2% 24.8%
3773064 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.57 47.0 2.78e-01 100.0% 39.8%
3842942 10.13.1.1 beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase 0.56 47.0 3.41e-01 100.0% 81.5%
4934486 2011.2.1.7 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 0.56 48.0 3.33e-01 100.0% 96.5%
3963504 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 45.0 3.74e-01 100.0% 71.5%
3492242 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.55 46.0 2.70e-01 100.0% 40.2%
3955464 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 41.0 3.74e-01 84.1% 64.4%
3470912 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 48.0 3.90e-01 100.0% 76.7%
3208139 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.53 40.0 3.64e-01 87.3% 56.8%
5030213 69.1.1.4 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.53 44.0 3.45e-01 96.8% 77.3%
3720671 222.1.1.27 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PF27832 0.52 41.0 3.12e-01 93.7% 88.9%
3816110 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.52 39.0 2.83e-01 100.0% 24.4%
4426077 241.1.1.2 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.51 38.0 3.01e-01 100.0% 34.8%
3781214 2484.1.1.90 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDDh_C 0.50 42.0 2.92e-01 98.4% 37.8%
4934222 375.1.1.12 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27e 0.50 38.0 3.78e-01 100.0% 76.5%