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ON287368.1__UQT02563.1__CHIBITOTORO_00270__00027

Bact-Vir

ON287368.1__UQT02563.1__CHIBITOTORO_00270__00027

Identity

Accession:
ON287368 ↗
Kingdom:
phage

Quality

85.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Serratia_phage_vB_SmaM-ChibiTotoro

TaxID: 2943831

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-71
PDB
Domain cluster: rep: MT708549.1__QOV06289.1__CPT_Maja_069__00069__D2-54
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 46.0 4.49e-01 72.5% 82.7%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.65 50.0 4.63e-01 84.1% 88.8%
1h6lA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.64 57.0 3.63e-01 100.0% 56.1%
5inwA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.62 51.0 4.40e-01 89.9% 85.2%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.62 45.0 4.31e-01 76.8% 70.0%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.62 49.0 3.88e-01 85.5% 94.3%
4jn7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.61 45.0 3.68e-01 87.0% 44.5%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 54.0 3.52e-01 98.6% 27.9%
4nehA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.60 53.0 3.33e-01 100.0% 50.3%
3vcaA02 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.60 43.0 3.55e-01 73.9% 80.7%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 41.0 3.55e-01 76.8% 43.9%
7q04F01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.59 43.0 3.66e-01 75.4% 89.0%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.59 41.0 3.30e-01 72.5% 70.4%
2hesX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 50.0 3.26e-01 92.8% 34.4%
1hp7A01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.59 47.0 4.29e-01 88.4% 92.6%
1q47A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 49.0 3.02e-01 100.0% 36.4%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.57 46.0 4.02e-01 88.4% 86.9%
8adbA01 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.57 47.0 3.35e-01 89.9% 77.8%
2fwvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 44.0 3.27e-01 85.5% 85.8%
5jozA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 50.0 3.29e-01 98.6% 57.4%
4ok4A02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 43.0 2.83e-01 87.0% 85.0%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 46.0 3.73e-01 88.4% 74.0%
2cztA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 43.0 3.39e-01 85.5% 58.1%
3d2uE01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.56 48.0 3.55e-01 98.6% 39.4%
3flpA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 46.0 3.27e-01 92.8% 76.0%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 35.0 3.69e-01 71.0% 69.8%
1a87A01 3.30.1120.60 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Colicin 0.55 42.0 3.81e-01 84.1% 59.8%
1a31A03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.55 38.0 3.05e-01 73.9% 37.3%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 44.0 3.47e-01 97.1% 73.1%
3afcA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 46.0 2.85e-01 100.0% 40.6%
6ruiB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.53 44.0 3.25e-01 91.3% 84.6%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.53 44.0 3.52e-01 91.3% 92.7%
4f3nA00 3.40.50.12710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 41.0 2.67e-01 89.9% 86.1%
4jpqA00 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 43.0 3.04e-01 91.3% 56.6%
1ym5A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.52 44.0 3.48e-01 98.6% 79.7%
4gyiA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 46.0 4.08e-01 98.6% 78.6%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.51 41.0 3.47e-01 85.5% 80.9%
2jhnA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.51 41.0 3.57e-01 91.3% 71.7%
4an6B00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 35.0 2.71e-01 84.1% 29.8%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4623473 2004.1.1.433 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.71 44.0 2.72e-01 94.2% 11.8%
3612106 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.70 55.0 5.41e-01 84.1% 88.0%
3379143 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.68 46.0 3.17e-01 71.0% 94.8%
3455310 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.67 58.0 3.72e-01 94.2% 32.9%
3295575 284.1.3.2 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C 0.66 53.0 4.65e-01 85.5% 80.0%
3926119 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.66 59.0 3.82e-01 100.0% 66.3%
4196888 5.1.4.327 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_MABP1-WDR62_2nd 0.65 59.0 3.62e-01 100.0% 37.7%
3418904 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.64 48.0 4.30e-01 81.2% 82.0%
3427945 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.64 48.0 4.27e-01 81.2% 89.0%
5019856 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.63 47.0 4.41e-01 79.7% 77.6%
4386896 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.63 47.0 3.13e-01 81.2% 96.9%
3897308 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.63 50.0 3.80e-01 87.0% 56.7%
3275762 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.62 56.0 3.50e-01 100.0% 62.9%
4003315 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.62 56.0 3.51e-01 100.0% 40.0%
3630840 5.1.3.10 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Phytase 0.62 55.0 3.47e-01 100.0% 57.8%
3338677 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.61 54.0 3.49e-01 100.0% 56.9%
3630631 5.1.4.327 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_MABP1-WDR62_2nd 0.61 56.0 3.15e-01 100.0% 19.6%
4451493 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.61 48.0 3.65e-01 87.0% 51.7%
3875866 9.1.1.11 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.61 48.0 3.65e-01 87.0% 52.4%
4123654 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.60 53.0 3.39e-01 100.0% 49.6%
None — 0.60 54.0 3.33e-01 100.0% 41.2%
4540137 2004.1.1.585 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15, AAA_21, AAA_23 0.60 53.0 3.38e-01 100.0% 49.6%
None — 0.60 53.0 3.38e-01 100.0% 50.6%
4161397 5.1.3.48 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Gmad1 0.60 52.0 3.45e-01 100.0% 56.7%
4386779 2004.1.1.429 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 0.60 53.0 3.37e-01 100.0% 49.3%
3191174 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.60 52.0 3.24e-01 100.0% 61.0%
5023640 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.59 46.0 4.41e-01 84.1% 83.5%
3785172 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 50.0 3.18e-01 92.8% 47.4%
3286878 9.1.1.11 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.58 46.0 3.53e-01 88.4% 57.7%
4088781 12.3.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.58 41.0 2.98e-01 75.4% 28.3%
5077287 304.139.1.2 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.58 50.0 3.41e-01 98.6% 71.8%
3625494 210.1.2.8 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › TANGO2 0.57 47.0 3.22e-01 94.2% 77.1%
3490456 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 43.0 3.46e-01 82.6% 69.7%
4026002 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 52.0 3.22e-01 100.0% 44.8%
3001014 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.57 44.0 3.44e-01 85.5% 89.3%
4109357 2004.1.1.442 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21 0.57 50.0 3.17e-01 100.0% 46.5%
3280721 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.56 48.0 3.88e-01 95.7% 70.4%
4024671 4041.1.1.0 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase 0.56 46.0 3.43e-01 89.9% 90.6%
3210422 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.56 47.0 2.83e-01 92.8% 56.7%
6687 5105.1.1.0 ↗ 0.56 44.0 3.91e-01 85.5% 60.2%
3170899 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.56 40.0 3.52e-01 75.4% 86.7%
4031151 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.55 40.0 4.00e-01 81.2% 97.3%
4982498 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 46.0 2.76e-01 100.0% 83.9%
3830738 2004.1.1.480 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 0.55 47.0 2.92e-01 95.7% 98.8%
5077400 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.55 47.0 4.02e-01 91.3% 65.4%
3593291 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 39.0 3.16e-01 78.3% 36.6%
3193556 2004.1.1.481 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_29 0.55 47.0 2.67e-01 97.1% 99.7%
3734392 2004.1.1.480 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 0.54 47.0 2.82e-01 97.1% 99.2%
4018889 2004.1.1.481 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_29 0.54 46.0 2.85e-01 97.1% 99.6%
3737237 2004.1.1.615 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_23, AAA_29 0.54 46.0 2.81e-01 97.1% 99.8%
3506540 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.54 46.0 3.86e-01 92.8% 96.5%
3835833 210.1.2.8 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › TANGO2 0.53 45.0 3.21e-01 100.0% 80.4%
5056868 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.53 48.0 2.96e-01 100.0% 80.0%
3225189 5.1.4.369 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, Beta-prop_EMC1_N 0.53 46.0 2.63e-01 100.0% 16.6%
3811166 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.53 45.0 3.08e-01 100.0% 52.9%
3217772 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 44.0 4.12e-01 95.7% 96.5%
3369128 2004.1.1.615 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_23, AAA_29 0.52 45.0 2.65e-01 97.1% 20.7%
4032337 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.51 39.0 3.03e-01 88.4% 35.2%
5041381 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.51 42.0 3.42e-01 94.2% 73.6%
4533419 2004.1.1.429 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 0.51 42.0 2.77e-01 100.0% 37.0%
3531090 223.2.1.6 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.51 37.0 2.83e-01 78.3% 62.9%
3469923 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 40.0 3.67e-01 89.9% 84.2%