←Back to structures

ON287372.1__UQT03049.1__TOTORO_01860__00186

Bact-Vir

ON287372.1__UQT03049.1__TOTORO_01860__00186

Identity

Accession:
ON287372 ↗
Kingdom:
phage

Quality

57.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Moabitevirus› Serratia_phage_vB_SmaS-Totoro

TaxID: 2943840

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-73
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wmvA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.73 29.0 4.26e-01 81.8% 100.0%
2dk1A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.65 32.0 3.63e-01 90.9% 60.0%
2l2mA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 42.0 4.14e-01 100.0% 62.9%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 35.0 3.17e-01 97.0% 39.6%
2wadA01 6.20.70.10 Special › Other non-globular › Ubiquitin Ligase Nedd4; Chain: W; › 0.61 30.0 3.70e-01 83.3% 90.0%
2z2mD01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.60 29.0 3.06e-01 78.8% 50.8%
2k7iA01 3.30.160.160 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YegP-like 0.56 37.0 4.10e-01 98.5% 95.8%
2hjjA00 3.30.160.130 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains 0.55 37.0 3.76e-01 100.0% 69.7%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.55 28.0 3.04e-01 87.9% 53.6%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.53 33.0 2.65e-01 92.4% 28.8%
3uw8A02 1.10.420.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 2 › Peroxidase, domain 2 0.52 42.0 3.43e-01 98.5% 44.8%
3kxyJ00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 44.0 3.59e-01 100.0% 71.3%
2kgtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 29.0 2.91e-01 90.9% 48.6%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.50 37.0 3.00e-01 100.0% 39.1%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3974688 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.74 45.0 5.11e-01 100.0% 82.0%
3281823 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.73 53.0 4.02e-01 100.0% 33.3%
4297945 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.70 44.0 4.74e-01 100.0% 76.4%
3284714 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.69 43.0 4.47e-01 100.0% 66.7%
5045320 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 34.0 3.58e-01 81.8% 48.3%
4929725 375.1.1.289 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF5679 0.66 31.0 3.71e-01 84.8% 66.7%
3788224 243.6.1.4 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.65 35.0 3.08e-01 89.4% 34.7%
4300864 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.64 37.0 2.29e-01 97.0% 9.3%
1389463 66.1.1.0 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain 0.64 29.0 3.55e-01 83.3% 66.7%
3781077 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.64 32.0 2.75e-01 84.8% 30.1%
3918968 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.63 41.0 2.60e-01 98.5% 13.2%
5064031 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 35.0 2.20e-01 90.9% 11.1%
3425722 386.1.1.117 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.62 39.0 3.61e-01 100.0% 50.6%
5075465 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.60 41.0 4.32e-01 100.0% 80.0%
3432156 386.1.1.117 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.60 39.0 4.22e-01 100.0% 80.0%
4188237 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.59 41.0 4.38e-01 100.0% 87.3%
3236050 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.59 43.0 3.65e-01 100.0% 47.3%
3222570 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 35.0 3.05e-01 100.0% 36.5%
3927236 216.1.1.17 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Med15_C 0.56 38.0 3.04e-01 100.0% 35.1%
7726 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.54 37.0 3.91e-01 100.0% 82.8%
4137634 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 35.0 3.18e-01 97.0% 47.4%
4929797 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.53 36.0 3.75e-01 100.0% 79.7%
3573585 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.52 30.0 3.32e-01 90.9% 70.4%
3389987 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.51 32.0 3.25e-01 89.4% 63.1%
3287098 317.1.1.6 ↗ a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › RamC_N 0.51 40.0 2.94e-01 86.4% 42.8%
4117297 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 29.0 2.90e-01 92.4% 50.0%
3358147 220.1.1.241 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › EPL1 0.51 40.0 2.65e-01 98.5% 22.4%
3689391 708.1.2.6 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA 0.50 36.0 2.94e-01 77.3% 70.3%
4119875 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.50 33.0 3.36e-01 100.0% 69.2%