←Back to structures

ON287372.1__UQT03189.1__TOTORO_03270__00326

Bact-Vir

ON287372.1__UQT03189.1__TOTORO_03270__00326

Identity

Accession:
ON287372 ↗
Kingdom:
phage

Quality

54.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Moabitevirus› Serratia_phage_vB_SmaS-Totoro

TaxID: 2943840

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-83
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4devD01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.74 42.0 3.57e-01 100.0% 36.0%
4p02B01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.69 41.0 3.46e-01 100.0% 36.8%
6iomB01 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.64 39.0 4.03e-01 100.0% 64.9%
4esnA00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.61 52.0 5.36e-01 100.0% 97.4%
2wshA00 3.40.1440.40 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.61 44.0 3.74e-01 100.0% 46.3%
2yvsA02 3.30.70.2560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 30.0 3.52e-01 98.8% 69.5%
6iymA02 3.90.850.10 Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain 0.55 44.0 3.36e-01 91.4% 50.7%
6v77B02 3.90.850.10 Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain 0.54 43.0 3.28e-01 91.4% 51.9%
4lubB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 37.0 3.47e-01 72.8% 95.0%
4wsqB00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 43.0 3.01e-01 95.1% 55.8%
3cx5B02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.52 37.0 3.25e-01 77.8% 97.0%
2w2sA00 3.10.460.20 Alpha Beta › Roll › VSV matrix protein › Rhabdovirus matrix protein M2 0.52 46.0 3.69e-01 100.0% 64.4%
2rsvA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 42.0 2.74e-01 92.6% 27.5%
3ocjA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 37.0 2.57e-01 76.5% 82.0%
6j5yA00 3.90.850.10 Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain 0.51 42.0 3.13e-01 93.8% 74.7%
3afoB02 2.60.200.30 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 0.51 40.0 3.39e-01 85.2% 75.9%
4qq1C03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.51 43.0 4.28e-01 97.5% 90.9%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 43.0 3.22e-01 100.0% 83.3%
1osyA00 2.60.40.1790 Mainly Beta › Sandwich › Immunoglobulin-like › Fungal immunomodulatory protein Fve 0.50 38.0 3.50e-01 85.2% 83.3%
2kl6A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 41.0 3.74e-01 87.7% 65.7%
5aa7A00 2.70.50.50 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › chitin-binding protein cbp21 0.50 43.0 3.65e-01 100.0% 93.7%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5050380 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.76 41.0 3.97e-01 100.0% 47.8%
4263062 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.75 37.0 3.60e-01 100.0% 43.3%
5082838 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.75 42.0 4.29e-01 100.0% 57.5%
4943498 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.72 39.0 4.46e-01 100.0% 71.7%
4941345 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.71 41.0 4.01e-01 100.0% 52.2%
3258529 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.67 39.0 3.64e-01 100.0% 47.0%
3929392 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.66 59.0 5.14e-01 100.0% 64.8%
3239601 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.64 58.0 4.98e-01 100.0% 96.0%
3933783 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.64 56.0 4.79e-01 100.0% 64.4%
3924786 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.63 55.0 4.78e-01 100.0% 63.2%
3935204 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.62 54.0 4.66e-01 100.0% 61.5%
3939862 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.61 54.0 4.88e-01 100.0% 71.8%
4955838 11.1.1.103 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.61 43.0 3.72e-01 100.0% 49.2%
3922889 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.61 54.0 4.84e-01 100.0% 70.4%
3938009 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.60 53.0 4.74e-01 100.0% 68.7%
3585464 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.59 37.0 3.56e-01 100.0% 54.7%
None — 0.59 42.0 2.68e-01 100.0% 15.3%
3929359 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.59 50.0 4.65e-01 100.0% 82.6%
3929391 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.58 51.0 4.69e-01 100.0% 93.6%
3935205 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.58 50.0 4.47e-01 100.0% 70.8%
4071671 4194.1.1.2 ↗ a+b duplicates or obligate multimers › Prenyltransferase-like › Prenyltransferase-like › Prenyltransferase-like › Trp_DMAT 0.56 49.0 3.16e-01 100.0% 78.3%
4118076 4194.1.1.2 ↗ a+b duplicates or obligate multimers › Prenyltransferase-like › Prenyltransferase-like › Prenyltransferase-like › Trp_DMAT 0.56 48.0 3.15e-01 100.0% 86.1%
3928432 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.55 47.0 4.51e-01 100.0% 85.0%
5028800 225.1.1.6 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_2 0.55 44.0 3.49e-01 90.1% 44.6%
4512764 225.1.1.6 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_2 0.55 42.0 3.66e-01 85.2% 57.8%
4937727 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 37.0 3.29e-01 100.0% 48.7%
4423894 4194.1.1.2 ↗ a+b duplicates or obligate multimers › Prenyltransferase-like › Prenyltransferase-like › Prenyltransferase-like › Trp_DMAT 0.55 48.0 3.01e-01 100.0% 72.1%
3955635 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.54 43.0 3.85e-01 90.1% 60.0%
3457076 317.1.1.1 ↗ a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E 0.54 46.0 3.50e-01 96.3% 64.9%
4428384 11.9.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.53 42.0 3.00e-01 91.4% 34.4%
3278451 11.9.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.53 43.0 3.06e-01 93.8% 42.0%
3722767 11.9.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.52 43.0 3.00e-01 93.8% 62.1%
3722313 11.9.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.52 41.0 2.95e-01 91.4% 90.2%
3971219 11.9.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.52 42.0 3.10e-01 93.8% 44.4%
3976629 11.9.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.52 42.0 3.01e-01 93.8% 41.1%
3604610 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.52 34.0 3.84e-01 100.0% 84.6%
5035504 2484.1.1.22 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.52 44.0 3.47e-01 100.0% 82.6%
5024851 11.1.1.103 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.51 42.0 4.00e-01 88.9% 75.8%
3942089 11.9.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.51 42.0 3.02e-01 93.8% 66.9%
3738153 223.2.1.32 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 0.51 44.0 3.69e-01 97.5% 69.3%
D2 high residues 88-176
PDB