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ON287373.1__URC22562.1__KAMAJI_01340__00119

Bact-Vir

ON287373.1__URC22562.1__KAMAJI_01340__00119

Identity

Accession:
ON287373 ↗
Kingdom:
phage

Quality

70.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Serratia_phage_vB_SmaM-Kamaji

TaxID: 2943833

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-93
PDB
Domain cluster: rep: MK770119.1__QCW23779.1__AAS21_gp041__00041__D2-72
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26827.1 best Phage_T4_Y16B 38.0 1.80e-09 54.8% 83.7%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gxaE01 1.10.10.510 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain 0.69 49.0 4.97e-01 76.7% 83.6%
2qbyB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 45.0 4.22e-01 72.6% 59.3%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.64 51.0 4.66e-01 86.3% 68.0%
2a0uB01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.63 43.0 3.42e-01 72.6% 42.5%
1p6rA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 47.0 4.51e-01 80.8% 81.7%
3eyyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 45.0 4.41e-01 79.5% 84.1%
5ulcX00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.59 41.0 3.56e-01 74.0% 76.2%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.59 42.0 4.25e-01 78.1% 82.7%
4yiiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 51.0 5.19e-01 98.6% 100.0%
1x4qA01 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.57 43.0 4.34e-01 86.3% 84.5%
3o2pE00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 49.0 4.67e-01 100.0% 87.2%
1e94E03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.55 38.0 3.44e-01 72.6% 94.3%
1d5rA01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 47.0 3.63e-01 98.6% 54.0%
3s4tA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.53 40.0 2.71e-01 86.3% 86.4%
4htlA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 39.0 3.08e-01 87.7% 70.5%
3kd4A02 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.51 39.0 3.08e-01 83.6% 94.4%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3212935 101.1.1.4 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.76 53.0 5.81e-01 76.7% 88.3%
3908865 101.1.2.536 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc3_2 0.75 49.0 5.50e-01 75.3% 90.9%
5003693 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 51.0 5.41e-01 87.7% 86.2%
5070167 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 48.0 5.30e-01 82.2% 92.7%
3901880 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 48.0 5.02e-01 87.7% 81.5%
3982565 101.1.1.202 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_21 0.68 49.0 5.39e-01 76.7% 100.0%
2486293 8001.1.1.1 ↗ alpha arrays › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen › PPV_E1_C 0.68 49.0 4.96e-01 76.7% 85.9%
3989754 592.2.1.0 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like 0.66 52.0 5.28e-01 86.3% 95.7%
4933155 198.1.1.27 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › PF27234 0.66 50.0 4.82e-01 98.6% 71.8%
3411002 101.1.2.178 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.65 48.0 4.51e-01 78.1% 90.0%
3984312 101.1.1.202 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_21 0.65 51.0 4.96e-01 94.5% 77.5%
4205244 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.64 50.0 4.99e-01 95.9% 82.7%
4999336 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.63 45.0 4.37e-01 76.7% 75.3%
3800383 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 48.0 5.02e-01 90.4% 93.8%
4975282 545.1.2.0 ↗ alpha bundles › Gametocyte protein Pfg27-related › Gametocyte protein Pfg27-related › Sporozoite protein UIS3 soluble domain 0.59 49.0 4.78e-01 100.0% 86.3%
5028128 101.1.2.530 ↗ alpha arrays › HTH › HTH › winged helix domain › HVO_A0114 0.57 43.0 4.06e-01 80.8% 72.2%
3730259 509.1.1.1 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.56 39.0 4.10e-01 72.6% 95.4%
167309 592.2.1.3 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like › Nab2 0.56 44.0 3.96e-01 87.7% 63.8%
5056193 3352.1.1.0 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain 0.53 37.0 2.44e-01 72.6% 28.0%
4997552 7543.1.1.2 ↗ a/b three-layered sandwiches › Methylglyoxal synthase-like › Methylglyoxal synthase-like › Methylglyoxal synthase-like › MGS 0.51 35.0 2.62e-01 74.0% 69.0%
None — 0.50 42.0 2.98e-01 94.5% 98.3%