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ON287374.1__URC22736.1__KASHIRA_01620__00142

Bact-Vir

ON287374.1__URC22736.1__KASHIRA_01620__00142

Identity

Accession:
ON287374 ↗
Kingdom:
phage

Quality

78.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Serratia_phage_vB_SmaM-Kashira

TaxID: 2943834

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-91
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.67 47.0 3.20e-01 74.2% 28.3%
2v7sA00 3.30.2030.20 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.66 33.0 2.62e-01 74.2% 25.4%
1yr2A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.65 48.0 3.24e-01 78.7% 27.2%
1k32A01 2.120.10.60 Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain 0.63 46.0 3.20e-01 75.3% 31.6%
3o4hA01 2.130.10.150 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain 0.63 45.0 3.09e-01 74.2% 24.7%
8hpoK01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 45.0 2.88e-01 74.2% 36.9%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 46.0 3.08e-01 78.7% 41.0%
1k3sA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.62 44.0 4.16e-01 75.3% 82.4%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.61 44.0 4.56e-01 75.3% 94.0%
2jkbA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.61 42.0 2.76e-01 70.8% 28.0%
2w38A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.61 45.0 3.10e-01 78.7% 48.3%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.60 44.0 3.70e-01 77.5% 58.0%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 42.0 2.90e-01 74.2% 34.2%
7erlA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 43.0 3.45e-01 76.4% 45.8%
1xr0B01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 40.0 3.99e-01 70.8% 72.5%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 41.0 3.45e-01 73.0% 55.4%
3ffzA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 40.0 3.27e-01 75.3% 79.2%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.56 35.0 3.12e-01 80.9% 41.5%
3zx7A02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 42.0 3.67e-01 79.8% 82.5%
1xkpC00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 44.0 3.97e-01 87.6% 100.0%
3i8tA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 37.0 3.30e-01 73.0% 59.3%
3cqfA03 3.40.30.40 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Perfringolysin 0.54 37.0 3.36e-01 70.8% 95.8%
3lp9A00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.54 37.0 2.82e-01 70.8% 40.1%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.54 43.0 3.46e-01 86.5% 47.4%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.53 37.0 3.02e-01 71.9% 83.7%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.53 37.0 3.44e-01 83.1% 55.6%
3bywC00 2.60.120.610 Mainly Beta › Sandwich › Jelly Rolls › arabinofuranosyltransferase like domain 0.53 38.0 3.19e-01 76.4% 48.8%
1w2tA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.53 37.0 3.24e-01 73.0% 53.0%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.51 36.0 3.25e-01 86.5% 52.5%
4ifaA01 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.51 41.0 2.92e-01 88.8% 67.0%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1140096 5.1.3.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › YqgU 0.70 51.0 3.35e-01 75.3% 24.8%
4385734 5.1.4.567 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Helveticin_J 0.69 49.0 3.26e-01 73.0% 29.4%
3577464 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.69 51.0 3.41e-01 76.4% 28.1%
3484246 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.68 54.0 3.51e-01 85.4% 42.7%
3675561 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.67 46.0 3.15e-01 70.8% 26.4%
4994722 5.1.11.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.65 47.0 3.05e-01 74.2% 20.5%
5044599 5.1.4.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.65 47.0 2.73e-01 74.2% 11.5%
3413293 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 46.0 3.01e-01 73.0% 29.1%
3622343 5.1.3.9 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › OLF 0.65 47.0 3.42e-01 76.4% 38.3%
3598521 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.64 47.0 2.93e-01 77.5% 27.9%
3409624 5.1.4.32 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.64 50.0 3.19e-01 85.4% 31.2%
3402824 5.1.4.21 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 0.64 47.0 3.06e-01 78.7% 34.9%
3518523 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.63 45.0 3.12e-01 74.2% 30.5%
4442089 5.1.7.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 0.63 47.0 2.63e-01 78.7% 13.8%
3612239 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.63 44.0 3.03e-01 73.0% 37.4%
3506401 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 44.0 3.01e-01 74.2% 21.0%
4024327 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 43.0 2.92e-01 71.9% 28.9%
143915 5.1.4.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.60 45.0 3.05e-01 79.8% 40.4%
3290600 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.60 44.0 3.02e-01 76.4% 32.0%
3470543 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.60 42.0 2.85e-01 74.2% 25.6%
3967100 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.59 50.0 3.62e-01 92.1% 78.8%
3900479 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 41.0 2.94e-01 74.2% 30.2%
3739528 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.58 42.0 3.23e-01 75.3% 36.6%
4965842 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.58 49.0 3.45e-01 91.0% 71.5%
3598080 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 46.0 3.09e-01 86.5% 28.7%
4426203 868.1.1.2 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA_triPase 0.58 42.0 3.09e-01 77.5% 94.9%
4259660 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.58 50.0 3.52e-01 93.3% 94.1%
4827216 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.58 33.0 3.30e-01 73.0% 54.4%
3179848 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.57 42.0 3.62e-01 77.5% 57.6%
4977715 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 38.0 3.49e-01 78.7% 53.0%
5084037 10.1.1.22 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › DUF1349 0.56 39.0 3.00e-01 73.0% 39.9%
4024234 2003.1.5.28 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › mRNA_G-N7_MeTrfase 0.55 45.0 3.06e-01 91.0% 50.7%
3716012 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 42.0 2.82e-01 84.3% 39.7%
3191832 12.3.1.36 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › DUF5127 0.55 42.0 3.09e-01 85.4% 79.3%
3465613 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.55 39.0 2.68e-01 75.3% 25.6%
3595344 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.55 43.0 2.80e-01 83.1% 86.4%
3953943 9.27.1.1 ↗ beta barrels › Lipocalins/Streptavidin › LpqH › LpqH › Myco_19_kDa 0.55 41.0 3.87e-01 80.9% 89.1%
4218917 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.55 47.0 3.31e-01 95.5% 92.6%
4987737 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.54 46.0 3.17e-01 92.1% 87.2%
4937627 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 37.0 3.75e-01 71.9% 91.1%
4468976 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.53 43.0 3.06e-01 89.9% 87.9%
3460207 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.53 39.0 2.86e-01 79.8% 32.6%
3962450 9.27.1.0 ↗ beta barrels › Lipocalins/Streptavidin › LpqH › LpqH 0.53 40.0 3.80e-01 80.9% 90.5%
None — 0.53 31.0 2.44e-01 75.3% 26.8%
4927380 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.53 41.0 3.04e-01 86.5% 38.1%
4176398 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.53 44.0 3.10e-01 91.0% 69.8%
3583988 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 36.0 3.41e-01 70.8% 58.2%
5036807 3111.1.1.0 ↗ beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.52 36.0 3.55e-01 70.8% 83.2%
1438142 2484.1.1.69 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L18_c,Ribosomal_L5e 0.52 39.0 3.66e-01 80.9% 78.8%
3221612 12.3.1.42 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › DUF2152 0.52 40.0 3.02e-01 83.1% 35.1%
3884108 219.1.1.6 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.51 42.0 2.94e-01 87.6% 48.9%
3593728 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 38.0 3.23e-01 80.9% 52.7%