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ON287374.1__URC22741.1__KASHIRA_01670__00147

Bact-Vir

ON287374.1__URC22741.1__KASHIRA_01670__00147

Identity

Accession:
ON287374 ↗
Kingdom:
phage

Quality

88.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Serratia_phage_vB_SmaM-Kashira

TaxID: 2943834

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 9-63
PDB
Domain cluster: rep: MH590603.1__AXH70483.1__SEA_DAREDEVIL_96__00096__D8-70
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.75 65.0 4.39e-01 100.0% 34.1%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 58.0 5.51e-01 98.2% 73.0%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.72 61.0 4.23e-01 100.0% 82.6%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 54.0 5.19e-01 100.0% 71.9%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 53.0 4.84e-01 100.0% 63.0%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 53.0 5.58e-01 100.0% 97.9%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.68 52.0 5.38e-01 100.0% 88.5%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.68 51.0 5.38e-01 100.0% 93.8%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.66 44.0 4.72e-01 70.9% 91.3%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 51.0 3.96e-01 100.0% 38.4%
3e8lC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.64 53.0 3.88e-01 100.0% 89.2%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.64 50.0 5.06e-01 100.0% 87.0%
3a07B00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.64 52.0 4.20e-01 96.4% 96.6%
1pwaA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.63 50.0 4.09e-01 100.0% 91.9%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 48.0 4.14e-01 100.0% 52.2%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 50.0 3.82e-01 94.5% 47.2%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.61 48.0 4.76e-01 100.0% 83.3%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 44.0 4.59e-01 92.7% 89.6%
3kyfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 50.0 3.97e-01 100.0% 46.5%
2cy8A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.58 44.0 3.03e-01 81.8% 78.5%
2ykyB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.58 45.0 3.08e-01 83.6% 79.4%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.58 46.0 3.60e-01 100.0% 39.5%
4c9vA00 3.50.30.30 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › 0.58 51.0 3.87e-01 98.2% 100.0%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.57 51.0 4.29e-01 100.0% 60.2%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.57 46.0 3.57e-01 100.0% 92.6%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 48.0 4.12e-01 100.0% 77.9%
4a4yA01 2.60.200.50 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.57 48.0 4.07e-01 100.0% 96.9%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 49.0 4.86e-01 100.0% 94.7%
3sz6A00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 44.0 3.71e-01 98.2% 92.2%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 44.0 4.26e-01 100.0% 75.8%
2qeaB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 46.0 3.40e-01 100.0% 34.0%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 45.0 4.29e-01 100.0% 77.3%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.55 48.0 3.86e-01 100.0% 53.2%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.54 43.0 3.82e-01 100.0% 94.7%
2a0aA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 43.0 3.49e-01 100.0% 96.9%
3ujzA03 2.60.20.40 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › 0.54 37.0 3.11e-01 100.0% 40.0%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.54 44.0 4.23e-01 100.0% 77.3%
1dwnA00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.53 40.0 3.23e-01 89.1% 65.4%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 40.0 3.29e-01 92.7% 61.4%
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.53 43.0 3.75e-01 100.0% 76.8%
1m4kA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.38e-01 100.0% 48.0%
2hczX02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.52 36.0 3.05e-01 100.0% 39.4%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.52 38.0 3.04e-01 85.5% 55.6%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 44.0 4.16e-01 100.0% 89.7%
2xtsA02 2.60.40.650 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 41.0 3.18e-01 100.0% 37.7%
5k3xA02 2.60.40.650 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 40.0 3.26e-01 100.0% 43.4%
4kh8A01 2.40.128.540 Mainly Beta › Beta Barrel › Lipocalin › Domain of unknown function DUF4822 0.51 40.0 3.12e-01 100.0% 71.1%
2blfA02 2.60.40.650 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 40.0 3.21e-01 100.0% 43.0%
3qfgA00 2.60.40.1240 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 38.0 2.93e-01 87.3% 92.4%
5e4eC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 36.0 3.08e-01 100.0% 43.6%
3hufA01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.50 40.0 3.36e-01 100.0% 98.3%
5i92F01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.50 42.0 2.99e-01 96.4% 73.3%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4539244 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.72 49.0 3.95e-01 70.9% 71.4%
3998022 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.71 54.0 5.46e-01 100.0% 81.8%
3404936 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.71 54.0 5.62e-01 100.0% 90.0%
3782293 4.1.1.170 ↗ beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.70 51.0 5.14e-01 100.0% 78.2%
4321173 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.70 52.0 5.14e-01 100.0% 75.9%
3817476 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.70 53.0 5.57e-01 100.0% 90.0%
4342488 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 52.0 5.04e-01 100.0% 71.4%
3938589 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.70 52.0 5.45e-01 100.0% 90.0%
4009281 219.1.1.65 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like 0.69 55.0 4.44e-01 100.0% 45.7%
1145920 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.69 52.0 4.52e-01 100.0% 54.2%
4261492 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.68 55.0 4.10e-01 100.0% 36.3%
2570822 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.68 53.0 3.97e-01 100.0% 33.8%
3578208 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 54.0 5.50e-01 100.0% 89.1%
3881119 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 53.0 4.66e-01 100.0% 58.7%
3972547 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.67 54.0 3.88e-01 100.0% 31.2%
3576940 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 54.0 3.53e-01 100.0% 21.8%
3881123 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 52.0 4.50e-01 100.0% 55.3%
3270324 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.66 52.0 5.46e-01 100.0% 96.0%
3795384 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 53.0 3.54e-01 100.0% 22.8%
3492982 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.66 50.0 3.78e-01 100.0% 34.1%
3625264 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 53.0 4.41e-01 100.0% 51.6%
224033 219.1.1.65 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like 0.65 51.0 4.05e-01 100.0% 41.4%
135832 6.1.1.2 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Kunitz_legume 0.64 53.0 3.88e-01 100.0% 89.2%
3550644 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 50.0 5.04e-01 100.0% 85.5%
3604145 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 50.0 4.86e-01 100.0% 76.7%
5025104 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 48.0 4.93e-01 100.0% 90.0%
4432348 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 49.0 4.58e-01 100.0% 67.6%
3883159 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 49.0 4.19e-01 100.0% 52.2%
4482267 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.62 48.0 4.31e-01 100.0% 58.7%
3964733 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 46.0 4.68e-01 100.0% 81.8%
4405252 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.62 50.0 3.75e-01 100.0% 35.7%
3387378 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.62 55.0 4.77e-01 100.0% 69.4%
5025364 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.61 50.0 4.51e-01 100.0% 66.7%
3963455 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.61 53.0 3.94e-01 100.0% 38.6%
3540524 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 48.0 4.28e-01 89.1% 81.2%
5022491 4.1.1.182 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2097 0.60 50.0 4.43e-01 100.0% 62.4%
5034040 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 45.0 4.55e-01 100.0% 85.5%
4559371 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 48.0 4.66e-01 100.0% 81.0%
3943282 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.59 47.0 3.68e-01 100.0% 40.8%
160388 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.58 49.0 3.85e-01 100.0% 42.7%
2541236 3820.1.1.0 ↗ a+b complex topology › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain 0.58 50.0 4.23e-01 100.0% 76.0%
4079197 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 45.0 4.03e-01 100.0% 60.0%
3837954 1.1.7.87 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.56 49.0 4.16e-01 100.0% 60.0%
3217772 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 49.0 4.27e-01 100.0% 84.7%
5047239 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 49.0 4.73e-01 100.0% 85.9%
4849749 4959.1.1.0 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit 0.56 38.0 3.52e-01 72.7% 56.0%
4078162 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 48.0 4.40e-01 100.0% 81.1%
3868249 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.55 40.0 3.25e-01 100.0% 38.3%
4985969 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 47.0 4.58e-01 100.0% 88.3%
4023327 9.2.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › FBO_C 0.54 45.0 3.14e-01 100.0% 81.5%
4936291 4.1.1.487 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7205 0.53 42.0 4.08e-01 100.0% 80.0%
1557537 11.1.1.55 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Mo-co_dimer 0.52 41.0 3.28e-01 100.0% 43.0%
3441049 11.1.3.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Cu,Zn superoxide dismutase-like 0.51 41.0 3.49e-01 98.2% 96.2%
3721314 219.1.1.93 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 0.50 40.0 3.38e-01 100.0% 50.4%
D2 medium residues 66-110
PDB
Domain cluster: representative