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ON287374.1__URC22743.1__KASHIRA_01690__00149

Bact-Vir

ON287374.1__URC22743.1__KASHIRA_01690__00149

Identity

Accession:
ON287374 ↗
Kingdom:
phage

Quality

90.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-56
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.86 71.0 5.71e-01 100.0% 48.9%
1owfA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.84 57.0 4.48e-01 70.8% 35.4%
2cobA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.79 60.0 6.16e-01 100.0% 90.9%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 57.0 5.30e-01 100.0% 63.5%
4d7rA01 1.10.220.20 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › 0.75 63.0 5.40e-01 100.0% 58.5%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 50.0 4.76e-01 72.9% 60.3%
1r71A01 1.10.10.730 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain 0.73 54.0 5.23e-01 100.0% 71.4%
1x2nA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 58.0 5.54e-01 100.0% 80.0%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.70 56.0 4.71e-01 100.0% 66.0%
2e19A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 55.0 5.55e-01 95.8% 91.5%
1rqgA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.68 55.0 3.69e-01 89.6% 37.9%
1z82B02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.68 53.0 3.93e-01 89.6% 45.7%
1ignB02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 56.0 4.68e-01 100.0% 53.3%
4gbmA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 58.0 3.56e-01 97.9% 59.4%
1lfuP00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 56.0 4.84e-01 100.0% 58.5%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.67 57.0 5.16e-01 97.9% 86.6%
6fhoA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.66 46.0 3.09e-01 75.0% 81.3%
4mfiA00 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.66 47.0 2.77e-01 77.1% 80.1%
2d1hB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 53.0 4.31e-01 100.0% 46.9%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 51.0 4.57e-01 97.9% 59.0%
2h5nC00 1.10.3680.10 Mainly Alpha › Orthogonal Bundle › TerB-like › TerB-like 0.64 51.0 4.01e-01 100.0% 42.7%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.63 46.0 3.95e-01 81.2% 59.5%
1mw9X02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.63 51.0 3.70e-01 100.0% 31.3%
4fjqA01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.61 50.0 3.03e-01 95.8% 25.1%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 49.0 4.90e-01 93.8% 91.7%
4ryaA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.61 49.0 3.24e-01 89.6% 73.4%
2p67A01 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.61 51.0 4.98e-01 100.0% 88.5%
1rykA00 1.10.1470.10 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ 0.60 50.0 4.52e-01 100.0% 68.1%
1v9mA02 1.20.1690.10 Mainly Alpha › Up-down Bundle › V-type ATP synthase subunit C fold › V-type ATP synthase subunit C domain 0.60 48.0 3.98e-01 97.9% 71.3%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.59 44.0 3.93e-01 85.4% 56.0%
1eu8A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.59 47.0 3.09e-01 89.6% 75.1%
2mgwA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.59 39.0 3.85e-01 70.8% 63.5%
5iaiA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.59 46.0 3.05e-01 87.5% 76.8%
3c3dA02 1.10.8.240 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › CofD-like domain 0.58 40.0 3.42e-01 75.0% 64.8%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 45.0 3.32e-01 89.6% 81.2%
1tuoA03 3.40.120.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.58 49.0 3.69e-01 95.8% 93.2%
8h6qD01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.57 45.0 2.84e-01 97.9% 31.6%
2riqA01 1.10.20.130 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.57 42.0 3.84e-01 87.5% 60.6%
6hxpA01 1.10.230.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 0.56 46.0 3.81e-01 100.0% 94.9%
5f7vA00 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 43.0 2.63e-01 95.8% 56.4%
8carA01 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.55 48.0 2.85e-01 100.0% 13.5%
1oxjA02 1.25.40.170 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Smaug, PHAT domain 0.55 48.0 3.67e-01 97.9% 52.3%
3jr7A01 3.40.50.10440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 0.55 39.0 3.17e-01 100.0% 34.7%
1ku1A01 1.10.220.20 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › 0.54 46.0 4.01e-01 100.0% 63.5%
4r2fA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 42.0 2.92e-01 97.9% 37.2%
1ursA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 41.0 2.97e-01 95.8% 82.1%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.53 44.0 2.88e-01 100.0% 25.5%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4983508 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.85 70.0 6.20e-01 100.0% 62.9%
2507075 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.84 73.0 6.02e-01 100.0% 55.3%
4048893 101.17.1.1 alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.83 56.0 4.95e-01 70.8% 48.6%
4449615 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.82 72.0 5.81e-01 100.0% 52.2%
4379527 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.82 66.0 5.50e-01 100.0% 51.8%
4031352 6026.1.1.43 alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › DUF1024 0.81 56.0 4.61e-01 79.2% 41.7%
5014656 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.81 66.0 5.96e-01 89.6% 84.6%
4999433 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.81 65.0 6.43e-01 100.0% 88.0%
4981837 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.79 69.0 3.94e-01 100.0% 10.4%
4300463 101.1.1.217 alpha arrays › HTH › HTH › Three-helical HTH › RsmI_C 0.79 59.0 6.33e-01 91.7% 97.5%
4944767 101.1.2.883 alpha arrays › HTH › HTH › winged helix domain › Radical_SAM 0.78 65.0 5.73e-01 100.0% 62.7%
3829115 101.1.1.270 alpha arrays › HTH › HTH › Three-helical HTH › A_thal_3526 0.77 63.0 5.75e-01 100.0% 67.7%
5013347 101.1.2.946 alpha arrays › HTH › HTH › winged helix domain › PF26555 0.77 61.0 6.20e-01 95.8% 100.0%
3334461 101.1.1.270 alpha arrays › HTH › HTH › Three-helical HTH › A_thal_3526 0.76 62.0 5.39e-01 100.0% 58.7%
3340005 101.1.2.472 alpha arrays › HTH › HTH › winged helix domain › A_thal_3526 0.76 62.0 5.11e-01 100.0% 50.0%
3439843 101.1.1.270 alpha arrays › HTH › HTH › Three-helical HTH › A_thal_3526 0.76 61.0 5.12e-01 100.0% 51.8%
3341091 101.35.1.6 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › A_thal_3526 0.75 60.0 5.50e-01 100.0% 67.7%
3970291 101.1.1.217 alpha arrays › HTH › HTH › Three-helical HTH › RsmI_C 0.75 61.0 6.30e-01 93.8% 95.6%
4681823 101.17.1.1 alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.75 50.0 4.00e-01 70.8% 34.0%
5005200 101.1.1.545 alpha arrays › HTH › HTH › Three-helical HTH › DUF1699 0.75 57.0 5.48e-01 85.4% 72.7%
3396463 3919.1.1.0 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 0.74 64.0 5.09e-01 100.0% 48.0%
4983598 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 66.0 5.94e-01 100.0% 80.0%
5082787 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.73 61.0 4.94e-01 100.0% 48.0%
3789038 309.1.1.21 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16, Peptidase_M16_C, PqqF-like_C_4 0.73 63.0 3.55e-01 95.8% 38.2%
4936146 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.72 59.0 5.73e-01 100.0% 100.0%
4971669 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 63.0 4.44e-01 100.0% 33.8%
4928641 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.71 59.0 5.25e-01 100.0% 64.0%
3662725 101.1.1.217 alpha arrays › HTH › HTH › Three-helical HTH › RsmI_C 0.71 57.0 5.52e-01 93.8% 80.0%
3189238 4070.1.1.4 alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50B 0.70 62.0 3.93e-01 97.9% 57.0%
3967801 2006.1.3.16 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DUF1835 0.70 62.0 4.12e-01 100.0% 37.8%
5044549 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 62.0 4.95e-01 100.0% 50.5%
4384986 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.69 50.0 3.24e-01 79.2% 17.0%
3970076 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 55.0 5.45e-01 93.8% 88.0%
4979355 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 59.0 4.57e-01 100.0% 44.5%
3398316 101.1.2.248 alpha arrays › HTH › HTH › winged helix domain › DUF4777 0.68 58.0 4.89e-01 100.0% 57.6%
5032213 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.65 46.0 2.97e-01 75.0% 79.6%
3924903 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 52.0 4.84e-01 100.0% 75.4%
4479187 101.35.1.5 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.64 49.0 4.46e-01 100.0% 61.5%
3413051 101.1.2.248 alpha arrays › HTH › HTH › winged helix domain › DUF4777 0.64 52.0 4.87e-01 100.0% 73.8%
3735853 101.7.1.1 alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.63 50.0 4.81e-01 100.0% 81.7%
4327549 3455.1.1.0 alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.62 53.0 5.49e-01 95.8% 100.0%
3328316 3721.1.1.1 alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › VIT1 0.62 47.0 4.24e-01 85.4% 58.6%
3979666 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.61 51.0 4.87e-01 100.0% 86.7%
3822008 5069.1.3.93 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Prolamin_like 0.61 45.0 3.72e-01 81.2% 82.2%
4102625 132.3.1.1 alpha bundles › ACP-like › Hypothetical protein YjbJ › Hypothetical protein YjbJ › CsbD 0.61 51.0 4.84e-01 100.0% 78.3%
4963338 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.60 44.0 4.10e-01 91.7% 63.3%
10305 7516.1.1.25 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › TcdA_TcdB 0.58 48.0 2.85e-01 97.9% 28.4%
4009623 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.57 42.0 3.80e-01 87.5% 58.5%
3197246 3721.1.1.0 alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain 0.57 43.0 3.87e-01 83.3% 58.6%
3966878 3721.1.1.1 alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › VIT1 0.57 44.0 3.98e-01 89.6% 64.3%
4987900 2006.1.2.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › DHH 0.55 44.0 3.04e-01 97.9% 80.5%
5047035 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.53 39.0 3.64e-01 79.2% 65.0%
3732279 103.12.1.0 alpha arrays › RuvA-C › ANTAR domain › ANTAR domain 0.50 38.0 3.55e-01 83.3% 66.7%