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ON287374.1__URC22793.1__KASHIRA_02190__00199

Bact-Vir

ON287374.1__URC22793.1__KASHIRA_02190__00199

Identity

Accession:
ON287374 ↗
Kingdom:
phage

Quality

74.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Serratia_phage_vB_SmaM-Kashira

TaxID: 2943834

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 34-100
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rrnA01 3.30.70.2040 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 45.0 4.21e-01 71.6% 96.4%
2g7zA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.65 50.0 3.89e-01 85.1% 88.4%
1lzwA00 3.30.1390.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS 0.64 44.0 3.98e-01 71.6% 86.8%
3pm9A03 3.30.70.2190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 54.0 4.57e-01 100.0% 95.0%
3fsyA02 3.30.60.70 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Trimeric LpxA-like enzymes 0.63 38.0 4.36e-01 92.5% 95.0%
3fk4B01 3.30.70.150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RuBisCO large subunit, N-terminal domain 0.62 44.0 3.74e-01 76.1% 97.4%
5l6gA02 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.61 54.0 3.73e-01 100.0% 61.6%
2dt8A01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 52.0 4.10e-01 97.0% 87.9%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.61 42.0 4.60e-01 80.6% 96.0%
1zd0A01 3.30.2380.10 Alpha Beta › 2-Layer Sandwich › PF0523-like › CGI121/TPRKB 0.59 42.0 3.43e-01 76.1% 39.2%
4x9xA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 49.0 3.90e-01 97.0% 86.6%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.59 45.0 4.36e-01 83.6% 81.6%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.58 44.0 3.98e-01 82.1% 91.3%
1wojA00 3.90.1740.10 Alpha Beta › Alpha-Beta Complex › 2',3'-cyclic nucleotide 3'-phosphodiesterase fold › 2',3'-cyclic nucleotide 3'-phosphodiesterase superfamily 0.58 39.0 2.79e-01 70.1% 73.2%
3ttcA01 3.90.870.30 Alpha Beta › Alpha-Beta Complex › DHBP synthase › 0.57 39.0 2.74e-01 70.1% 56.6%
1r0xD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 39.0 2.70e-01 76.1% 81.7%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.55 47.0 4.33e-01 100.0% 92.4%
3cobC00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.55 43.0 2.86e-01 91.0% 59.1%
3aqoA01 3.30.70.3400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 40.0 3.79e-01 77.6% 100.0%
1mt1B00 3.50.20.10 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B 0.54 46.0 3.94e-01 98.5% 66.1%
1m1fB00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.53 41.0 3.61e-01 86.6% 89.5%
8onjA02 3.20.10.10 Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 0.52 39.0 3.05e-01 98.5% 35.7%
2wadA02 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.51 45.0 3.52e-01 100.0% 54.7%
3hwcA01 1.10.3140.10 Mainly Alpha › Orthogonal Bundle › 4-hydroxybutyryl-coa dehydratase, domain 1 › 4-hydroxybutyryl-coa dehydratase, domain 1 0.50 41.0 3.25e-01 91.0% 72.1%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4642338 807.1.1.1 ↗ a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD 0.70 51.0 5.65e-01 77.6% 96.2%
5040784 304.163.1.0 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.70 50.0 5.65e-01 77.6% 100.0%
419749 304.28.1.2 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Sec_GG 0.66 45.0 4.06e-01 71.6% 87.0%
1937101 2010.1.1.1 ↗ a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.65 50.0 3.89e-01 85.1% 88.4%
3307527 109.4.1.619 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DYW_deaminase 0.65 40.0 3.18e-01 73.1% 30.4%
4995671 3115.1.1.12 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 0.65 44.0 4.99e-01 80.6% 96.0%
5041711 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.65 45.0 4.51e-01 74.6% 100.0%
5045395 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.63 53.0 4.58e-01 95.5% 58.7%
3510118 4076.1.1.0 ↗ a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like 0.63 46.0 5.01e-01 94.0% 96.4%
4259426 329.1.1.1 ↗ a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD 0.61 45.0 3.58e-01 77.6% 95.6%
4949196 304.117.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC 0.61 48.0 5.00e-01 85.1% 100.0%
4660026 308.1.1.2 ↗ a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.61 44.0 3.94e-01 76.1% 86.0%
3375945 109.4.1.619 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DYW_deaminase 0.60 39.0 3.29e-01 73.1% 39.1%
4216350 2010.1.1.1 ↗ a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.59 48.0 3.78e-01 95.5% 85.0%
4524847 329.1.1.1 ↗ a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD 0.58 43.0 3.51e-01 80.6% 93.1%
4372916 244.1.1.16 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › GGR_cat 0.57 40.0 3.33e-01 74.6% 64.0%
5074385 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 42.0 4.03e-01 80.6% 100.0%
4565839 304.120.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.57 42.0 4.45e-01 80.6% 100.0%
5011383 304.163.1.0 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.57 42.0 4.44e-01 80.6% 93.3%
3704357 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 45.0 2.98e-01 89.6% 97.9%
5083428 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.55 40.0 4.08e-01 77.6% 100.0%
4116291 329.1.1.1 ↗ a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD 0.55 41.0 3.38e-01 82.1% 96.2%
4974011 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.55 39.0 4.02e-01 77.6% 100.0%
4210862 329.1.1.1 ↗ a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD 0.55 41.0 3.44e-01 83.6% 49.6%
4284428 329.1.1.1 ↗ a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD 0.54 44.0 3.62e-01 89.6% 66.4%
None — 0.54 39.0 3.50e-01 76.1% 86.3%
3840014 3747.1.1.1 ↗ a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod 0.54 46.0 3.89e-01 95.5% 93.9%
4981661 304.57.1.0 ↗ a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like 0.54 46.0 4.32e-01 98.5% 98.8%
4296472 329.1.1.1 ↗ a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD 0.53 48.0 3.60e-01 100.0% 84.2%
4958402 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.53 41.0 2.79e-01 88.1% 82.1%
4963354 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.52 45.0 4.02e-01 97.0% 84.2%
3453417 2492.1.1.39 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › DYW_deaminase 0.52 39.0 3.17e-01 82.1% 88.1%
5041412 304.57.1.0 ↗ a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like 0.52 44.0 4.14e-01 98.5% 90.6%
4608913 329.1.1.1 ↗ a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD 0.51 47.0 3.77e-01 100.0% 76.8%
3737779 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.50 40.0 3.60e-01 85.1% 88.9%