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ON287374.1__URC22824.1__KASHIRA_02500__00230

Bact-Vir

ON287374.1__URC22824.1__KASHIRA_02500__00230

Identity

Accession:
ON287374 ↗
Kingdom:
phage

Quality

83.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Serratia_phage_vB_SmaM-Kashira

TaxID: 2943834

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-67
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 68.0 5.98e-01 100.0% 72.3%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.77 67.0 5.74e-01 100.0% 93.0%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 65.0 4.63e-01 100.0% 39.8%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.73 61.0 5.25e-01 100.0% 89.2%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 63.0 5.34e-01 100.0% 76.0%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 60.0 5.46e-01 100.0% 83.9%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 59.0 5.41e-01 100.0% 90.0%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 60.0 5.50e-01 100.0% 94.9%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 58.0 5.32e-01 97.7% 79.7%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 58.0 5.68e-01 100.0% 98.0%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.69 57.0 4.67e-01 100.0% 70.0%
1whjA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.69 58.0 4.50e-01 100.0% 63.7%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 57.0 5.17e-01 100.0% 89.1%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 52.0 3.94e-01 90.9% 45.5%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 56.0 5.34e-01 100.0% 98.2%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 56.0 5.21e-01 100.0% 96.6%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 55.0 5.16e-01 100.0% 94.7%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 52.0 4.67e-01 100.0% 80.8%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 54.0 4.85e-01 100.0% 86.6%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 54.0 4.89e-01 100.0% 75.4%
3k8rA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.65 44.0 3.89e-01 72.7% 98.5%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 49.0 4.58e-01 100.0% 68.3%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 52.0 4.18e-01 100.0% 55.1%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.63 50.0 4.41e-01 100.0% 66.2%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.63 53.0 4.31e-01 100.0% 80.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 50.0 4.28e-01 100.0% 59.0%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 50.0 4.65e-01 100.0% 71.0%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 49.0 4.69e-01 100.0% 82.1%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 50.0 4.64e-01 90.9% 91.1%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 49.0 4.76e-01 100.0% 96.2%
2iz4A02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.61 43.0 4.42e-01 100.0% 81.0%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 46.0 4.23e-01 100.0% 62.1%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 49.0 4.52e-01 100.0% 73.8%
1m5zA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.61 44.0 3.70e-01 86.4% 59.3%
4kbmB01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 47.0 4.54e-01 100.0% 90.9%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 49.0 4.61e-01 100.0% 76.3%
1itxA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.60 45.0 3.90e-01 84.1% 97.3%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 46.0 4.26e-01 100.0% 68.2%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 45.0 4.30e-01 100.0% 88.9%
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.59 49.0 4.22e-01 100.0% 85.5%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 45.0 3.08e-01 90.9% 39.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 45.0 4.06e-01 100.0% 60.3%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 43.0 4.20e-01 100.0% 77.6%
6y48D01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 47.0 2.94e-01 100.0% 42.6%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 44.0 4.08e-01 100.0% 77.9%
2j5uA03 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.57 43.0 3.73e-01 90.9% 95.0%
2x8nA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.56 47.0 3.71e-01 97.7% 84.5%
2eayB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 47.0 4.57e-01 100.0% 89.8%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 38.0 3.79e-01 72.7% 100.0%
3ef2A02 3.30.460.70 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.56 44.0 3.26e-01 100.0% 31.2%
4bdxA00 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.54 39.0 3.40e-01 88.6% 54.2%
4kx7A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.53 41.0 2.72e-01 93.2% 32.4%
2p25A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 39.0 3.07e-01 93.2% 82.4%
2jneA00 2.10.290.10 Mainly Beta › Ribbon › Rubredoxin-like › YfgJ-like 0.51 36.0 3.36e-01 100.0% 54.9%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 39.0 3.15e-01 95.5% 87.6%
3luuA00 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.50 40.0 3.35e-01 97.7% 95.5%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4957888 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.88 77.0 6.87e-01 100.0% 70.0%
5017637 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.85 71.0 6.61e-01 100.0% 74.5%
4974669 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.84 72.0 5.67e-01 100.0% 46.7%
4937389 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.82 73.0 5.38e-01 100.0% 46.4%
3174977 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.82 73.0 5.61e-01 100.0% 47.4%
5004050 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 73.0 6.20e-01 100.0% 62.9%
4029093 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 73.0 4.92e-01 100.0% 31.0%
4956630 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.81 73.0 4.88e-01 100.0% 34.2%
3837995 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 71.0 6.57e-01 100.0% 80.0%
4938828 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 69.0 6.23e-01 100.0% 76.7%
4481026 4.1.1.407 ↗ beta barrels › SH3 › SH3 › SH3 › PF29661 0.75 66.0 5.97e-01 100.0% 75.0%
1175108 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.74 64.0 4.81e-01 100.0% 58.9%
4942163 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 62.0 5.54e-01 100.0% 72.3%
4931113 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.72 60.0 4.62e-01 100.0% 50.9%
4983006 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 63.0 5.54e-01 100.0% 72.3%
3991244 4.1.1.243 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.72 60.0 6.01e-01 100.0% 95.6%
3396514 386.1.1.259 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF29169 0.71 50.0 5.01e-01 97.7% 73.3%
3617355 4.1.1.348 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor, SMN_YG-box 0.71 63.0 4.86e-01 100.0% 50.5%
4075769 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.71 62.0 5.81e-01 100.0% 83.6%
3409299 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.71 62.0 5.11e-01 100.0% 58.7%
3866038 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.71 62.0 4.99e-01 100.0% 54.1%
3289944 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.71 60.0 4.86e-01 100.0% 63.3%
3917568 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.70 61.0 4.52e-01 100.0% 40.9%
3277860 4.1.1.368 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3097_N 0.70 57.0 5.17e-01 100.0% 72.3%
4118552 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 57.0 4.94e-01 100.0% 73.3%
4508412 4.1.1.437 ↗ beta barrels › SH3 › SH3 › SH3 › PF29224 0.69 57.0 5.30e-01 100.0% 85.0%
3876945 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 43.0 2.66e-01 86.4% 10.1%
4470603 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.69 59.0 3.99e-01 100.0% 28.5%
3558557 330.16.1.0 ↗ a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain 0.69 48.0 4.04e-01 75.0% 70.7%
5055039 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.68 54.0 4.00e-01 100.0% 40.7%
3415739 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.68 47.0 5.08e-01 72.7% 100.0%
4013671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 57.0 5.38e-01 100.0% 100.0%
4945344 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 54.0 3.28e-01 100.0% 13.5%
3251559 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 51.0 5.06e-01 100.0% 94.0%
3328647 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.65 52.0 4.40e-01 100.0% 57.6%
5038570 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.65 50.0 3.93e-01 100.0% 45.0%
3393347 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 52.0 4.31e-01 100.0% 48.9%
4420173 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.64 52.0 4.53e-01 100.0% 62.7%
5078464 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 48.0 4.83e-01 100.0% 91.1%
3878271 101.1.2.284 ↗ alpha arrays › HTH › HTH › winged helix domain › WAC_Acf1_DNA_bd 0.63 50.0 3.62e-01 100.0% 31.0%
5000503 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.63 52.0 4.17e-01 100.0% 49.0%
3707634 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 49.0 4.78e-01 100.0% 83.6%
3593222 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 49.0 4.26e-01 100.0% 56.1%
3504417 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 48.0 4.10e-01 100.0% 51.1%
3389175 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 49.0 4.14e-01 100.0% 50.0%
4026957 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 48.0 4.58e-01 100.0% 75.0%
3578417 6043.1.1.4 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like › PHAF1 0.61 44.0 3.70e-01 79.5% 67.5%
3251940 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.61 49.0 4.31e-01 100.0% 61.3%
4980041 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 48.0 4.79e-01 93.2% 91.1%
3920026 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.61 47.0 3.21e-01 100.0% 21.0%
2126408 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.60 46.0 4.09e-01 100.0% 60.5%
4930029 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.60 47.0 3.77e-01 100.0% 48.2%
3476478 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 46.0 3.89e-01 100.0% 46.3%
3562174 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 47.0 3.85e-01 100.0% 46.0%
4026282 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 45.0 3.89e-01 100.0% 51.1%
4406214 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.59 42.0 3.34e-01 72.7% 75.3%
3795121 4.1.1.110 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_FRX1 0.58 45.0 4.20e-01 100.0% 67.7%
3616243 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 45.0 4.36e-01 100.0% 80.0%
3228278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 43.0 4.05e-01 100.0% 67.7%
4960549 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 43.0 4.21e-01 97.7% 80.0%
3500033 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 40.0 3.96e-01 93.2% 76.0%
4986272 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 38.0 3.73e-01 93.2% 72.7%
3947154 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.51 44.0 3.54e-01 100.0% 78.9%