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ON287378.1__URX37673.1__FNPHOIGM_00036__00036

Bact-Vir

ON287378.1__URX37673.1__FNPHOIGM_00036__00036

Identity

Accession:
ON287378 ↗
Kingdom:
phage

Quality

77.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autotranscriptaviridae› Ningirsuvirus› Dickeya_phage_DchS19

TaxID: 2951194

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-43
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26807.1 best Phage_T7_GP04 29.2 9.30e-07 100.0% 63.8%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fe1A00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.87 72.0 4.87e-01 100.0% 26.2%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.85 73.0 5.04e-01 100.0% 29.9%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.82 59.0 4.64e-01 82.9% 37.3%
2uvgA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.81 68.0 4.14e-01 100.0% 15.6%
3qw4B02 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.81 62.0 3.82e-01 88.6% 15.6%
5o6uB00 3.30.70.2540 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › CRISPR-associated endoribonuclease Cas6/Csy4 0.80 64.0 4.07e-01 97.1% 18.1%
6qelA01 1.10.860.10 Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A 0.77 60.0 3.95e-01 100.0% 21.2%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.77 66.0 5.52e-01 100.0% 56.5%
2cr7A01 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.76 58.0 4.90e-01 94.3% 49.2%
2keyA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.75 59.0 4.35e-01 100.0% 31.2%
5c8aA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.74 63.0 4.95e-01 100.0% 44.9%
1kf6D00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.74 64.0 4.43e-01 100.0% 42.0%
3qxzA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.71 56.0 4.92e-01 100.0% 58.3%
2jgdB02 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.69 57.0 3.32e-01 100.0% 10.7%
1ufhA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.67 50.0 3.35e-01 100.0% 19.4%
2mh2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 51.0 4.33e-01 91.4% 51.6%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.63 50.0 3.72e-01 88.6% 31.2%
3u62A01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.62 43.0 3.14e-01 85.7% 24.0%
3kxyT00 6.20.290.10 Special › Other non-globular › Dna Ligase; domain 1 › 0.59 41.0 3.72e-01 88.6% 50.8%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4377543 1112.1.1.0 ↗ alpha arrays › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain 0.96 81.0 6.62e-01 91.4% 53.3%
3460419 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.93 81.0 6.78e-01 100.0% 58.3%
4124570 1054.1.1.1 ↗ alpha bundles › Arginine decarboxylase C-terminal helical extension › Arginine decarboxylase C-terminal helical extension › Arginine decarboxylase C-terminal helical extension › Arg_decarbox_C 0.91 79.0 7.35e-01 100.0% 77.8%
3343260 192.15.1.123 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Na_H_Exchanger 0.86 76.0 6.54e-01 100.0% 63.6%
3842812 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.80 69.0 4.20e-01 100.0% 16.3%
3392566 3929.1.1.2 ↗ alpha bundles › THO1 C-terminal domain › THO1 C-terminal domain › THO1 C-terminal domain › DUF7084 0.79 59.0 5.39e-01 82.9% 60.4%
4954381 7018.1.1.0 ↗ few secondary structure elements › gp76 helical domain › gp76 helical domain › gp76 helical domain 0.78 57.0 5.78e-01 82.9% 82.9%
3588582 304.103.1.1 ↗ a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase 0.76 62.0 3.93e-01 100.0% 17.2%
3735607 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.75 63.0 4.86e-01 97.1% 43.8%
3455580 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.74 61.0 3.72e-01 100.0% 14.3%
3988856 4146.1.1.1 ↗ alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › YqgQ-like 0.72 59.0 4.78e-01 100.0% 47.3%
142706 2486.1.1.1 ↗ a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ECH_1 0.71 56.0 3.42e-01 100.0% 13.6%
3408369 284.1.3.4 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.67 55.0 4.51e-01 100.0% 46.7%
4016953 3826.1.1.0 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.65 58.0 4.95e-01 100.0% 83.6%