Back to structures

ON323462.1__URG13616.1__T751_00053__00053

Bact-Vir

ON323462.1__URG13616.1__T751_00053__00053

Identity

Accession:
ON323462 ↗
Kingdom:
phage

Quality

80.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-77
PDB
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gm5A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.71 49.0 3.91e-01 72.0% 47.0%
4xq7A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.62 44.0 3.45e-01 73.3% 80.8%
7vd7A01 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.62 53.0 4.94e-01 98.7% 76.1%
1jv2B04 4.10.1240.30 Few Secondary Structures › Irregular › Hormone receptor fold › 0.61 49.0 4.68e-01 88.0% 86.0%
2w5nA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.60 48.0 3.10e-01 88.0% 35.6%
3n54B01 6.20.190.10 Special › Other non-globular › Nuclear Transport Factor 2; Chain: A, › Nutrient germinant receptor protein C, domain 1 0.60 41.0 4.49e-01 70.7% 93.4%
3gzrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 49.0 4.06e-01 92.0% 87.2%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 35.0 3.78e-01 76.0% 68.3%
1kw3B02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 47.0 3.75e-01 89.3% 82.5%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 46.0 3.00e-01 86.7% 43.5%
1ar0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 45.0 3.89e-01 88.0% 86.4%
3h3hB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 43.0 3.75e-01 82.7% 85.0%
3ub1D02 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 48.0 4.14e-01 93.3% 80.7%
8f5pE01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 46.0 2.94e-01 92.0% 33.5%
6s6yD02 3.30.70.520 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 45.0 3.62e-01 89.3% 91.4%
4obiA00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.54 35.0 3.34e-01 88.0% 55.2%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 35.0 2.81e-01 70.7% 30.1%
6lbrA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 46.0 3.41e-01 94.7% 59.4%
1kxlA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 46.0 3.48e-01 96.0% 63.6%
6n90A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.54 44.0 4.24e-01 90.7% 86.4%
3mfxB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 42.0 3.76e-01 88.0% 85.1%
2fclA00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.54 44.0 3.51e-01 92.0% 50.6%
5ay6A01 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.53 46.0 3.56e-01 97.3% 48.0%
3d9wA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.53 41.0 3.74e-01 84.0% 89.2%
5flwA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 45.0 3.04e-01 94.7% 28.8%
3nwsA01 2.40.50.800 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 47.0 3.83e-01 100.0% 78.7%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.53 43.0 4.27e-01 97.3% 85.2%
3u2aA00 3.30.450.310 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 46.0 4.01e-01 97.3% 85.7%
4lduA02 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.52 38.0 3.38e-01 77.3% 67.9%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.52 42.0 3.49e-01 90.7% 60.1%
4i93A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 43.0 3.97e-01 90.7% 98.9%
3kf6A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 39.0 3.21e-01 81.3% 77.2%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 38.0 3.08e-01 82.7% 42.3%
1g5hA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 43.0 2.99e-01 100.0% 81.3%
2pi2D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 38.0 3.26e-01 81.3% 76.4%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4998603 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.72 54.0 5.50e-01 90.7% 80.0%
3808531 5.1.4.550 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.66 51.0 3.31e-01 82.7% 28.1%
3892575 827.1.1.1 a+b two layers › Integrin beta tail domain › Integrin beta tail domain › Integrin beta tail domain › Integrin_B_tail 0.65 53.0 5.27e-01 89.3% 87.5%
3508989 2484.1.1.230 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27073 0.64 44.0 3.47e-01 72.0% 36.1%
1140466 827.1.1.1 a+b two layers › Integrin beta tail domain › Integrin beta tail domain › Integrin beta tail domain › Integrin_B_tail 0.64 50.0 4.99e-01 93.3% 83.1%
3924083 2484.1.1.204 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 0.64 43.0 3.28e-01 70.7% 32.4%
4000117 5.1.4.224 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_RFWD3 0.63 49.0 3.20e-01 85.3% 32.4%
3390712 827.1.1.0 a+b two layers › Integrin beta tail domain › Integrin beta tail domain › Integrin beta tail domain 0.61 48.0 4.57e-01 88.0% 86.7%
3507177 2484.1.1.204 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 0.60 41.0 2.56e-01 70.7% 13.1%
3610047 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.60 41.0 3.23e-01 73.3% 33.1%
3698006 7512.1.1.24 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_5 0.60 43.0 2.90e-01 77.3% 28.2%
3742745 7512.1.1.137 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1, Glyco_transf_5, PF26775 0.59 43.0 2.58e-01 77.3% 15.5%
4979425 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 40.0 3.06e-01 70.7% 35.8%
4941339 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.59 51.0 4.48e-01 96.0% 69.1%
3916761 2484.1.1.198 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT, DUF4371 0.59 40.0 2.45e-01 70.7% 12.2%
3924241 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 46.0 2.69e-01 86.7% 14.0%
5029487 209.1.1.0 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.57 43.0 3.16e-01 81.3% 59.5%
1891709 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.57 38.0 3.33e-01 70.7% 70.2%
3517477 2484.1.1.230 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27073 0.56 40.0 3.58e-01 73.3% 55.2%
3740970 5.1.4.249 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_pof12 0.56 47.0 3.03e-01 92.0% 38.9%
3626173 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 43.0 2.87e-01 85.3% 50.5%
4860677 5.1.5.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.55 43.0 2.75e-01 86.7% 32.4%
3460491 223.2.1.6 a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.55 47.0 3.54e-01 100.0% 94.0%
3172150 2.1.1.23 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1 0.55 46.0 3.47e-01 96.0% 61.0%
3967125 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 48.0 3.82e-01 100.0% 51.6%
3641525 223.2.1.6 a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.54 43.0 3.30e-01 90.7% 55.0%
4323154 2.1.1.341 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30208 0.53 41.0 3.55e-01 82.7% 79.1%
5044451 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 46.0 4.52e-01 98.7% 90.0%
4348187 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 41.0 4.00e-01 89.3% 76.5%
5005180 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.53 37.0 3.18e-01 73.3% 68.0%
3264686 868.1.1.1 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.52 43.0 3.25e-01 89.3% 56.0%
3566243 2484.1.1.239 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT, PF27046, PF27073 0.52 44.0 2.68e-01 93.3% 23.5%
3977220 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.52 42.0 2.99e-01 93.3% 91.2%
3955407 243.1.1.69 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF6459 0.52 41.0 3.59e-01 88.0% 85.6%
3412221 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 39.0 3.30e-01 81.3% 79.2%
4948720 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.51 38.0 3.33e-01 81.3% 87.9%
5052424 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.50 38.0 3.10e-01 80.0% 82.1%
4031371 264.2.1.1 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac 0.50 34.0 2.87e-01 70.7% 63.6%