←Back to structures
ON352054.1__URG13549.1__EFN13_10__00010
Bact-VirON352054.1__URG13549.1__EFN13_10__00010
Identity
- Accession:
- ON352054 ↗
- Kingdom:
- phage
Quality
90.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Rountreeviridae›
Copernicusvirus›
Enterococcus_phage_N13
TaxID: 2945938
Cluster
View cluster (27 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-169
Domain cluster:
rep: NC_041875.1__YP_009594310.1__FDG92_gp21__00021__D5-180
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01510.31 best | Amidase_2 | 85.5 | 5.70e-24 | 83.1% | 98.5% |
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2y28B00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.84 | 78.0 | 7.52e-01 | 96.2% | 94.4% |
| 2bh7A02 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.83 | 72.0 | 7.38e-01 | 88.7% | 98.0% |
| 3rdrA00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.83 | 75.0 | 7.66e-01 | 96.9% | 98.0% |
| 4olsA00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.82 | 78.0 | 7.41e-01 | 100.0% | 97.8% |
| 1yb0B00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.82 | 76.0 | 7.70e-01 | 100.0% | 98.1% |
| 3latA00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.81 | 78.0 | 7.00e-01 | 100.0% | 82.1% |
| 1aroL00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.80 | 68.0 | 7.09e-01 | 94.4% | 94.6% |
| 6su5A01 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.78 | 70.0 | 7.26e-01 | 98.1% | 99.3% |
| 1ohtA00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.78 | 71.0 | 6.88e-01 | 95.0% | 91.9% |
| 4ivvA00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.76 | 72.0 | 7.00e-01 | 100.0% | 97.1% |
| 2eaxA00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.76 | 70.0 | 6.96e-01 | 96.2% | 95.7% |
| 3ep1A00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.72 | 66.0 | 6.56e-01 | 97.5% | 97.0% |
| 2xz8A00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.71 | 57.0 | 6.15e-01 | 90.0% | 97.8% |
| 3ds8A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.58 | 42.0 | 3.66e-01 | 89.4% | 47.8% |
| 3fleA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.58 | 41.0 | 3.60e-01 | 90.6% | 48.6% |
| 1emsA02 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.56 | 36.0 | 3.99e-01 | 91.9% | 78.5% |
| 5cs2A00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.56 | 37.0 | 3.82e-01 | 91.9% | 70.1% |
| 4g4sO01 | 3.40.50.12120 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › POC1 chaperone | 0.55 | 34.0 | 3.13e-01 | 90.6% | 47.5% |
| 2afcA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.54 | 42.0 | 4.32e-01 | 91.3% | 85.6% |
| 2jbwA02 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 39.0 | 3.32e-01 | 97.5% | 45.7% |
| 2ze6A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 34.0 | 3.78e-01 | 93.1% | 79.8% |
| 1acoA01 | 3.30.499.10 | Alpha Beta › 2-Layer Sandwich › Aconitase; domain 3 › Aconitase, domain 3 | 0.54 | 31.0 | 2.91e-01 | 91.9% | 43.3% |
| 3afgA02 | 3.40.50.200 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain | 0.53 | 42.0 | 3.45e-01 | 90.6% | 44.5% |
| 1r6vA03 | 3.40.50.200 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain | 0.53 | 42.0 | 3.30e-01 | 91.9% | 38.6% |
| 3sqlA02 | 3.40.50.10870 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycosyl hydrolase family 3 | 0.53 | 35.0 | 3.59e-01 | 90.6% | 68.0% |
| 5bmoC00 | 3.40.50.10320 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LmbE-like | 0.53 | 38.0 | 3.34e-01 | 93.1% | 47.9% |
| 1mugA00 | 3.40.470.10 | Alpha Beta › 3-Layer(aba) Sandwich › Uracil-DNA Glycosylase, subunit E › Uracil-DNA glycosylase-like domain | 0.52 | 41.0 | 4.06e-01 | 97.5% | 79.4% |
| 4tvsA00 | 3.40.50.12190 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 38.0 | 3.47e-01 | 76.2% | 71.9% |
| 3f67A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 40.0 | 3.54e-01 | 96.2% | 55.0% |
| 1gtxA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.51 | 36.0 | 2.96e-01 | 90.6% | 38.6% |
| 1cecA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 42.0 | 3.30e-01 | 98.1% | 41.7% |
| 5b51A01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.51 | 28.0 | 3.07e-01 | 90.0% | 62.9% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4650125 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.87 | 84.0 | 8.15e-01 | 100.0% | 97.7% |
| 2774594 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.86 | 75.0 | 7.70e-01 | 97.5% | 94.7% |
| 2845647 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.84 | 73.0 | 7.53e-01 | 97.5% | 94.1% |
| 4265814 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.83 | 77.0 | 7.68e-01 | 96.2% | 98.8% |
| 3953294 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.83 | 80.0 | 7.53e-01 | 100.0% | 90.3% |
| 4088805 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.83 | 77.0 | 7.27e-01 | 96.2% | 84.3% |
| 4140249 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.83 | 77.0 | 7.67e-01 | 100.0% | 94.5% |
| 3278570 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.82 | 78.0 | 7.45e-01 | 99.4% | 95.6% |
| 4837356 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.81 | 68.0 | 6.87e-01 | 85.6% | 96.2% |
| 4031908 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.81 | 78.0 | 7.29e-01 | 100.0% | 94.7% |
| 3957313 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.81 | 78.0 | 7.04e-01 | 100.0% | 95.1% |
| 1902111 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.81 | 76.0 | 7.55e-01 | 100.0% | 95.2% |
| 2445367 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.81 | 69.0 | 7.06e-01 | 95.6% | 91.0% |
| 1902112 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.81 | 78.0 | 7.00e-01 | 100.0% | 82.1% |
| 3897241 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.78 | 72.0 | 7.29e-01 | 96.9% | 100.0% |
| 3416111 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.77 | 71.0 | 6.94e-01 | 96.2% | 93.5% |
| 1904118 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.76 | 72.0 | 7.07e-01 | 100.0% | 98.3% |
| 4034532 | 285.1.1.0 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like | 0.71 | 67.0 | 6.72e-01 | 100.0% | 99.4% |
| 3721036 | 7604.1.1.1 ↗ | a/b three-layered sandwiches › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_N | 0.64 | 40.0 | 4.31e-01 | 90.0% | 73.3% |
| 3203825 | 2499.1.1.1 ↗ | a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 | 0.53 | 41.0 | 3.20e-01 | 91.9% | 36.9% |
| 4995471 | 7529.1.1.0 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like | 0.53 | 41.0 | 4.03e-01 | 90.6% | 75.9% |
| 5065460 | 2499.1.1.1 ↗ | a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 | 0.52 | 44.0 | 3.43e-01 | 90.6% | 43.8% |
| 5068108 | 2499.1.1.1 ↗ | a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 | 0.51 | 44.0 | 3.48e-01 | 92.5% | 48.0% |
D2
high
residues 188-254
Domain cluster:
rep: KY472224.1__AQT27695.1__EFP10_60__00060__D169-232