Back to structures

ON366409.1__UUW39237.1__X__00042

Bact-Vir

ON366409.1__UUW39237.1__X__00042

Identity

Accession:
ON366409 ↗
Kingdom:
phage

Quality

85.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-76
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1r0uA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 52.0 4.23e-01 88.6% 92.3%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.64 51.0 4.26e-01 87.1% 87.6%
5gv0A00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.63 51.0 3.92e-01 88.6% 74.7%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 54.0 3.88e-01 95.7% 33.8%
1x9tA02 3.90.1620.10 Alpha Beta › Alpha-Beta Complex › adenovirus 2 penton base, domain 2 › adenovirus 2 penton base, domain 2 0.63 51.0 3.38e-01 88.6% 41.4%
2r5rA00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.62 50.0 3.45e-01 90.0% 63.4%
4c84A00 3.50.30.30 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › 0.61 47.0 3.82e-01 85.7% 98.6%
5brrE01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 53.0 4.38e-01 100.0% 67.9%
5fahA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 53.0 4.53e-01 100.0% 64.1%
2w01B00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.59 42.0 3.07e-01 75.7% 69.5%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.59 49.0 3.63e-01 95.7% 34.2%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.59 49.0 4.96e-01 91.4% 100.0%
2olgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 51.0 4.37e-01 100.0% 72.2%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.58 44.0 3.95e-01 81.4% 77.6%
2ijzA02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.58 49.0 4.39e-01 100.0% 98.1%
3pp2A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 46.0 3.97e-01 88.6% 82.1%
1s3rA04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.58 45.0 3.85e-01 88.6% 53.2%
3lq6A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.57 49.0 4.27e-01 100.0% 95.6%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 47.0 4.67e-01 100.0% 91.7%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.56 47.0 3.77e-01 100.0% 46.2%
3h7tB01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 48.0 4.11e-01 100.0% 69.7%
2lfuA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.56 45.0 3.82e-01 92.9% 83.7%
7kcgA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 43.0 3.50e-01 84.3% 98.5%
7sxqA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 38.0 2.69e-01 72.9% 81.9%
3w1eA03 2.40.10.410 Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain 0.55 45.0 4.29e-01 98.6% 96.6%
2ichA01 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.55 44.0 3.46e-01 95.7% 96.1%
1mkfA02 2.60.40.1340 Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like 0.55 48.0 3.64e-01 100.0% 90.1%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 43.0 3.58e-01 88.6% 76.9%
2dtcA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 44.0 3.77e-01 90.0% 79.3%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 42.0 3.61e-01 88.6% 88.1%
5fcrA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 46.0 3.94e-01 100.0% 66.4%
4g9mB00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 44.0 3.62e-01 95.7% 97.2%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 41.0 3.60e-01 84.3% 77.5%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 40.0 3.92e-01 85.7% 71.2%
6yiiA01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.53 42.0 3.01e-01 88.6% 69.7%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.53 45.0 3.71e-01 100.0% 67.6%
2mamA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 3.70e-01 91.4% 84.7%
1ntvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 42.0 3.31e-01 87.1% 67.1%
3h51A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 40.0 3.26e-01 82.9% 89.4%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.52 39.0 3.47e-01 87.1% 76.1%
4hscX04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.52 40.0 3.46e-01 88.6% 53.6%
6wwdB00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.52 41.0 3.08e-01 90.0% 51.1%
4eg9A00 2.50.20.40 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.52 38.0 2.82e-01 84.3% 97.0%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 40.0 3.58e-01 90.0% 80.9%
3l50A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.51 41.0 3.37e-01 90.0% 64.7%
1ywhA01 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.51 36.0 3.47e-01 85.7% 65.4%
1dfaA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.50 43.0 3.17e-01 98.6% 74.8%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 40.0 3.50e-01 88.6% 84.5%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 40.0 3.69e-01 87.1% 75.3%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.50 43.0 3.53e-01 97.1% 78.6%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3587744 9.9.1.1 beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.70 55.0 4.38e-01 85.7% 98.6%
5012554 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 51.0 3.65e-01 80.0% 79.5%
3689020 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.67 49.0 3.16e-01 90.0% 18.3%
3636807 1.1.5.30 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_oxase_2 0.67 57.0 3.79e-01 95.7% 40.4%
5078649 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.65 51.0 3.69e-01 85.7% 35.5%
4968263 1.1.5.91 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_C 0.64 55.0 3.88e-01 95.7% 31.8%
3414950 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 51.0 4.37e-01 88.6% 75.7%
4029824 2484.1.1.20 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.63 45.0 3.01e-01 75.7% 33.2%
55 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.63 54.0 3.93e-01 95.7% 35.6%
3597134 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.62 53.0 3.59e-01 100.0% 69.5%
4023315 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.62 54.0 5.07e-01 100.0% 84.4%
4990637 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.62 49.0 4.67e-01 85.7% 72.3%
5079504 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.62 49.0 3.86e-01 90.0% 90.6%
3936038 220.1.1.14 beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.62 50.0 4.29e-01 90.0% 84.1%
3823190 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.61 53.0 4.13e-01 100.0% 90.0%
4847775 2487.1.1.12 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › ZNRF_3_ecto 0.61 46.0 3.70e-01 85.7% 96.8%
4939745 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.60 52.0 3.71e-01 98.6% 31.4%
3166727 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 46.0 3.79e-01 88.6% 71.0%
3210984 2487.1.1.0 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.60 47.0 3.69e-01 88.6% 96.9%
3637417 4099.1.1.10 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 0.60 45.0 3.28e-01 82.9% 91.4%
5064712 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.59 46.0 3.60e-01 90.0% 88.6%
3589333 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 49.0 4.49e-01 92.9% 75.8%
3063143 2498.1.1.94 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › PF26320 0.59 45.0 2.81e-01 87.1% 40.0%
3448327 4.1.1.150 beta barrels › SH3 › SH3 › SH3 › DUF3123 0.59 49.0 4.93e-01 92.9% 94.3%
4197307 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.59 47.0 3.68e-01 91.4% 91.5%
3517452 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.59 50.0 3.93e-01 100.0% 47.9%
3874464 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.58 45.0 2.89e-01 85.7% 17.5%
4321663 4004.1.1.10 beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › PI3K_1B_p101 0.58 50.0 3.67e-01 97.1% 67.7%
4486024 4004.1.1.10 beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › PI3K_1B_p101 0.57 49.0 3.68e-01 98.6% 71.4%
4669352 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.57 44.0 3.88e-01 87.1% 64.5%
3263018 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 44.0 3.98e-01 87.1% 79.0%
3427504 4.1.1.150 beta barrels › SH3 › SH3 › SH3 › DUF3123 0.57 44.0 4.49e-01 90.0% 98.6%
4876506 2487.1.1.12 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › ZNRF_3_ecto 0.56 43.0 3.34e-01 85.7% 88.8%
4027836 220.1.1.13 beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.56 44.0 3.58e-01 91.4% 58.7%
3702960 4004.1.1.0 beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like 0.55 43.0 3.29e-01 85.7% 84.1%
3698484 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 43.0 3.41e-01 88.6% 74.8%
None 0.55 42.0 3.46e-01 87.1% 72.9%
5010503 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 48.0 4.35e-01 100.0% 81.1%
4980439 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.54 42.0 3.22e-01 90.0% 89.5%
4561925 6.1.1.0 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.54 46.0 3.98e-01 95.7% 97.3%
3225532 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.54 42.0 3.61e-01 87.1% 80.0%
4115421 11.15.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Perfringolysin O beta sandwich domain › Perfringolysin O beta sandwich domain › Thiol_cytolys_C 0.54 41.0 3.54e-01 90.0% 51.3%
3595969 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.54 42.0 3.65e-01 88.6% 89.6%
3482374 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 40.0 2.83e-01 87.1% 36.4%
3445177 9.1.1.10 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › VDE 0.53 44.0 3.29e-01 94.3% 79.5%
3949274 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.53 40.0 3.56e-01 87.1% 67.0%
3394788 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.53 45.0 3.20e-01 100.0% 76.2%
393055 11.1.1.229 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IRK_C 0.53 44.0 3.42e-01 94.3% 60.7%
3620107 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.53 46.0 3.72e-01 100.0% 93.6%
3877571 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.53 44.0 3.82e-01 95.7% 92.2%
3727125 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 45.0 3.92e-01 100.0% 80.0%
4655959 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 45.0 4.07e-01 100.0% 79.0%
5020143 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 43.0 3.31e-01 98.6% 82.7%
3412723 220.1.1.132 beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.52 40.0 3.35e-01 87.1% 69.6%
3275991 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 40.0 3.35e-01 88.6% 67.4%
4004117 220.1.1.13 beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.52 39.0 3.24e-01 88.6% 75.3%
5045949 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 45.0 4.00e-01 100.0% 86.7%
5068112 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 42.0 3.78e-01 95.7% 90.5%
4943909 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 3.69e-01 95.7% 80.9%
None 0.51 40.0 2.64e-01 94.3% 95.9%
3448678 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.50 41.0 3.39e-01 97.1% 57.9%