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ON366411.1__USL89387.1__vBBceHLY2_00111__00111

Bact-Vir

ON366411.1__USL89387.1__vBBceHLY2_00111__00111

Identity

Accession:
ON366411 ↗
Kingdom:
phage

Quality

89.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-62
PDB
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.74 56.0 5.83e-01 100.0% 87.3%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 54.0 5.33e-01 100.0% 75.8%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 54.0 5.52e-01 100.0% 82.8%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.72 47.0 5.06e-01 100.0% 80.0%
4c92B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 57.0 4.64e-01 100.0% 55.2%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.59 45.0 4.45e-01 91.5% 78.1%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 43.0 4.37e-01 91.5% 87.5%
4p72A04 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.55 36.0 3.37e-01 91.5% 52.6%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.52 44.0 4.10e-01 100.0% 78.8%
2m0yA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 45.0 4.20e-01 100.0% 78.4%
3c9gA01 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.51 41.0 3.38e-01 96.6% 76.2%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5002601 4.1.1.485 beta barrels › SH3 › SH3 › SH3 › DUF6897 0.73 52.0 5.30e-01 100.0% 76.3%
3956735 6055.1.1.1 extended segments › Preprotein translocase subunit YajC › Preprotein translocase subunit YajC › Preprotein translocase subunit YajC › YajC 0.68 47.0 5.13e-01 100.0% 95.6%
4009688 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.68 47.0 4.64e-01 100.0% 67.7%
4165723 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.67 47.0 4.57e-01 100.0% 67.7%
3972526 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 58.0 5.49e-01 100.0% 85.7%
3588755 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 56.0 5.27e-01 100.0% 79.7%
4933648 4203.1.1.0 few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.65 56.0 5.42e-01 96.6% 95.4%
4662947 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.63 45.0 4.41e-01 100.0% 70.8%
2784372 4.1.1.8 beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.60 47.0 4.63e-01 100.0% 81.0%
3630462 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.54 39.0 3.04e-01 78.0% 33.6%
3750819 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.53 41.0 3.38e-01 94.9% 53.0%
D2 high residues 75-125
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3t9jA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.86 72.0 5.08e-01 90.2% 36.1%
4gouA03 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.86 72.0 4.69e-01 90.2% 23.4%
1bgcA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.84 69.0 4.75e-01 88.2% 35.4%
3kkbA00 1.20.120.880 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain 0.84 73.0 5.33e-01 94.1% 42.1%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.84 76.0 5.84e-01 100.0% 75.5%
3u0cA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.84 74.0 5.20e-01 98.0% 37.1%
2q1fA02 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.84 74.0 4.32e-01 98.0% 19.6%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.84 75.0 5.91e-01 98.0% 54.5%
3tklB01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.84 75.0 6.97e-01 98.0% 85.5%
2x9xA04 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.83 68.0 6.75e-01 90.2% 100.0%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.82 72.0 6.58e-01 98.0% 92.5%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.82 75.0 6.54e-01 100.0% 73.0%
4dkcB00 1.20.1250.80 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-34 0.81 69.0 4.80e-01 94.1% 30.6%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.81 64.0 6.57e-01 86.3% 95.9%
2p4vA01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.81 72.0 6.23e-01 98.0% 76.3%
2jdiG01 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.80 63.0 5.93e-01 84.3% 100.0%
3dkqA02 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.80 65.0 6.72e-01 88.2% 97.9%
3cegA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.79 63.0 3.86e-01 86.3% 16.4%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.79 69.0 6.59e-01 96.1% 91.4%
8sbeA01 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.79 66.0 4.44e-01 96.1% 93.4%
3fnbA01 1.20.1440.110 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase 0.79 65.0 5.00e-01 92.2% 43.0%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.78 69.0 6.05e-01 98.0% 70.3%
2ch7A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.78 66.0 4.06e-01 96.1% 66.3%
2gv9A05 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.76 65.0 6.19e-01 98.0% 81.4%
3pt1A02 1.20.930.60 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.76 67.0 5.07e-01 100.0% 68.3%
2hepA00 1.10.287.540 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.75 56.0 5.97e-01 90.2% 100.0%
3qf7A02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.73 63.0 5.90e-01 96.1% 82.5%
1zbtA01 6.10.140.1950 Special › Helix non-globular › Helix Hairpins › 0.72 66.0 5.52e-01 100.0% 86.7%
2kkmA01 1.20.1440.170 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Translation machinery-associated protein 16-like 0.70 59.0 4.54e-01 98.0% 75.2%
4n4gA01 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.69 58.0 4.56e-01 96.1% 44.1%
6fakA02 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.65 53.0 4.69e-01 98.0% 65.4%
7crnA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.64 47.0 2.98e-01 76.5% 58.0%
4ceiA05 1.10.486.10 Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 0.63 54.0 3.82e-01 96.1% 77.2%
2lfhA00 4.10.280.10 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain 0.62 35.0 3.22e-01 88.2% 42.6%
6mfvC01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 41.0 2.96e-01 94.1% 24.3%
1ngkB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 51.0 3.80e-01 92.2% 37.8%
2ffjA01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.59 44.0 4.34e-01 86.3% 75.0%
3zq5A03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.59 49.0 3.47e-01 90.2% 85.0%
4od8D00 6.10.140.1880 Special › Helix non-globular › Helix Hairpins › 0.58 43.0 4.31e-01 82.4% 84.3%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None 0.92 70.0 4.44e-01 80.4% 19.5%
2524047 601.14.1.1 alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin 0.90 83.0 5.58e-01 98.0% 78.4%
3755476 3755.1.1.0 alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related 0.90 81.0 5.42e-01 98.0% 32.0%
3348106 5076.2.1.10 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › PF29520 0.90 82.0 4.98e-01 98.0% 20.4%
3642421 603.1.1.5 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N 0.90 80.0 5.80e-01 96.1% 44.0%
4667859 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.89 81.0 6.05e-01 98.0% 48.7%
4202466 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.89 73.0 7.73e-01 88.2% 100.0%
3406025 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.89 79.0 6.40e-01 96.1% 57.8%
4998819 2484.1.1.124 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.88 81.0 5.81e-01 98.0% 41.5%
3386700 304.58.1.0 a+b two layers › Alpha-beta plaits › FepE-like › FepE-like 0.88 77.0 4.68e-01 96.1% 21.4%
4542284 109.4.1.210 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 0.87 73.0 4.68e-01 94.1% 21.5%
3253283 192.5.1.14 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA 0.87 79.0 6.27e-01 98.0% 58.9%
4939089 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.86 73.0 4.46e-01 92.2% 17.3%
3192393 2004.1.1.430 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn 0.86 76.0 4.23e-01 98.0% 8.9%
5032045 4163.1.1.0 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like 0.86 73.0 5.79e-01 94.1% 74.0%
4977369 304.48.1.3 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B 0.85 78.0 4.86e-01 100.0% 42.4%
4858809 2004.1.1.2 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.85 70.0 5.66e-01 94.1% 48.4%
4213046 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.85 76.0 6.97e-01 98.0% 81.5%
3510145 133.1.1.1 alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.85 77.0 5.09e-01 98.0% 52.2%
4774281 1147.1.1.1 alpha bundles › RNA polymerase II elongation factor ELL2 C-terminal domain › RNA polymerase II elongation factor ELL2 C-terminal domain › RNA polymerase II elongation factor ELL2 C-terminal domain › Occludin_ELL 0.85 74.0 5.69e-01 96.1% 47.7%
4999065 2484.1.1.124 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.84 78.0 5.37e-01 100.0% 34.8%
4565383 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.84 69.0 6.98e-01 88.2% 90.0%
None 0.84 69.0 4.34e-01 94.1% 18.4%
2464385 192.27.1.0 alpha bundles › Long alpha-hairpin › Helical hairpin in putative tRNA methyltransferase › Helical hairpin in putative tRNA methyltransferase 0.84 68.0 6.31e-01 88.2% 76.2%
4485576 1.1.17.4 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S64 0.84 75.0 4.56e-01 98.0% 42.8%
2163472 3729.1.1.1 alpha arrays › Legumain prodomain › Legumain prodomain › Legumain prodomain › Legum_prodom 0.84 70.0 4.93e-01 92.2% 68.2%
3205743 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.83 65.0 4.85e-01 84.3% 35.8%
3582116 1147.1.1.1 alpha bundles › RNA polymerase II elongation factor ELL2 C-terminal domain › RNA polymerase II elongation factor ELL2 C-terminal domain › RNA polymerase II elongation factor ELL2 C-terminal domain › Occludin_ELL 0.83 72.0 5.39e-01 96.1% 45.8%
3180442 109.4.1.18 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA 0.83 66.0 3.90e-01 90.2% 11.9%
4300120 605.1.1.108 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › GrpE 0.83 68.0 6.63e-01 90.2% 90.9%
3796589 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.83 71.0 5.68e-01 96.1% 55.0%
3955489 2484.1.1.211 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB 0.82 71.0 4.64e-01 96.1% 52.9%
2029634 1147.1.1.1 alpha bundles › RNA polymerase II elongation factor ELL2 C-terminal domain › RNA polymerase II elongation factor ELL2 C-terminal domain › RNA polymerase II elongation factor ELL2 C-terminal domain › Occludin_ELL 0.82 69.0 5.27e-01 94.1% 46.1%
3740547 5086.1.1.87 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ING 0.81 72.0 5.49e-01 98.0% 50.0%
4883924 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.80 70.0 6.04e-01 98.0% 67.5%
3576943 11.12.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD,Neur_chan_memb 0.79 63.0 3.91e-01 88.2% 16.1%
None 0.78 70.0 5.02e-01 100.0% 61.3%
4966687 192.3.1.1 alpha bundles › Long alpha-hairpin › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Sod_Fe_N 0.77 62.0 5.36e-01 94.1% 89.4%
4354984 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.76 63.0 4.72e-01 96.1% 36.3%
3637662 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.76 60.0 5.04e-01 86.3% 52.9%
4958744 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.75 63.0 4.99e-01 98.0% 53.6%
3588519 101.1.2.49 alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C 0.65 52.0 3.83e-01 98.0% 33.3%