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ON366411.1__USL89454.1__vBBceHLY2_00178__00178

Bact-Vir

ON366411.1__USL89454.1__vBBceHLY2_00178__00178

Identity

Accession:
ON366411 ↗
Kingdom:
phage

Quality

92.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Bacillus_phage_vB_BceH_LY2

TaxID: 2950457

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 44-85
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2iboA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.80 70.0 5.49e-01 100.0% 85.4%
2kl8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.78 66.0 5.32e-01 100.0% 91.8%
6lpnA03 3.30.70.2190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.75 62.0 4.66e-01 100.0% 86.8%
4ggmX02 3.40.140.80 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › LpxI C-terminal catalytic domain 0.65 54.0 3.76e-01 100.0% 30.0%
3ln6A01 3.30.590.20 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › 0.65 54.0 3.16e-01 100.0% 30.3%
1kvdB00 3.30.44.10 Alpha Beta › 2-Layer Sandwich › Smk Toxin, Beta chain › Smk Toxin, beta chain 0.65 47.0 3.83e-01 76.2% 74.0%
2hzmB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.63 47.0 3.11e-01 92.9% 89.9%
5a2fA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 54.0 3.97e-01 100.0% 49.1%
4ofkB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 50.0 3.87e-01 100.0% 48.1%
1cs6A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 52.0 4.01e-01 100.0% 43.9%
4dunA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.60 46.0 3.38e-01 88.1% 40.9%
4csqA00 2.30.29.190 Mainly Beta › Roll › PH-domain like › 0.59 49.0 3.72e-01 100.0% 77.0%
2bc4A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 50.0 3.76e-01 100.0% 42.2%
5i0dA05 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 49.0 3.47e-01 100.0% 38.1%
1vz8A02 3.10.20.340 Alpha Beta › Roll › Ubiquitin-like (UB roll) › ArgJ beta chain, C-terminal domain 0.57 48.0 3.60e-01 100.0% 83.0%
5vmzA03 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.56 44.0 4.47e-01 100.0% 97.5%
2hiyA01 3.30.70.1280 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SP0830-like domains 0.55 42.0 3.62e-01 100.0% 88.6%
5tipA01 2.70.9.10 Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Adenovirus Type 2 Hexon, domain 4 0.55 43.0 2.96e-01 100.0% 44.1%
2cswA01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.52 39.0 3.04e-01 100.0% 88.9%
2vtcA00 2.70.50.70 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › 0.51 42.0 2.74e-01 100.0% 34.2%
1okgA03 3.30.1670.10 Alpha Beta › 2-Layer Sandwich › 3-mercaptopyruvate sulfurtransferase, domain 3 › 3-mercaptopyruvate sulfurtransferase, domain 3 0.50 44.0 3.76e-01 100.0% 68.1%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4122240 304.56.1.0 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like 0.76 64.0 5.06e-01 100.0% 86.2%
3423236 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.73 56.0 4.84e-01 92.9% 61.3%
5064028 304.128.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.70 58.0 4.92e-01 100.0% 92.0%
3412434 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 51.0 5.10e-01 100.0% 84.4%
1100102 2492.1.1.12 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › LpxI_C 0.65 54.0 3.80e-01 100.0% 31.2%
5025807 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.65 52.0 3.73e-01 100.0% 98.1%
5029665 327.7.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.64 52.0 4.79e-01 92.9% 72.7%
3738248 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.61 45.0 3.94e-01 100.0% 49.3%
4926915 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.61 45.0 3.40e-01 78.6% 82.9%
2669379 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.58 48.0 3.12e-01 100.0% 25.9%
3621028 7.1.1.10 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.56 42.0 3.65e-01 95.2% 50.0%
5449 304.121.1.1 ↗ a+b two layers › Alpha-beta plaits › SP0830-like › SP0830-like › DUF1697 0.55 42.0 3.55e-01 100.0% 83.0%
4060264 304.41.1.1 ↗ a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N 0.54 42.0 2.98e-01 90.5% 42.0%
3798311 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.54 39.0 3.68e-01 92.9% 61.8%
3699220 284.1.1.6 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › DUF1930 0.52 45.0 3.81e-01 97.6% 64.3%
4028010 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 45.0 3.37e-01 100.0% 46.7%