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ON392159.1__URC17691.1__SEA_TARDUS_76__00076

Bact-Vir

ON392159.1__URC17691.1__SEA_TARDUS_76__00076

Identity

Accession:
ON392159 ↗
Kingdom:
phage

Quality

72.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stackebrandtviridae› Zitchvirus› Gordonia_phage_Tardus

TaxID: 2939734

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-57
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lx7A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.87 65.0 6.86e-01 100.0% 89.1%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.81 65.0 6.25e-01 100.0% 77.2%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.80 70.0 6.57e-01 100.0% 79.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 64.0 5.61e-01 100.0% 61.6%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 64.0 5.87e-01 100.0% 69.7%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 65.0 5.87e-01 100.0% 69.1%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 66.0 6.78e-01 100.0% 98.0%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.76 69.0 6.05e-01 100.0% 89.2%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 67.0 6.75e-01 100.0% 100.0%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 64.0 6.15e-01 100.0% 81.4%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 67.0 5.91e-01 100.0% 76.0%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.75 67.0 4.89e-01 100.0% 60.9%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 63.0 6.31e-01 100.0% 96.2%
3h6zA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 62.0 4.85e-01 100.0% 50.0%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 62.0 5.55e-01 100.0% 80.0%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.69 62.0 4.81e-01 100.0% 52.3%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 59.0 5.31e-01 100.0% 80.8%
1zuuA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 60.0 5.82e-01 98.0% 100.0%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 60.0 5.29e-01 100.0% 82.7%
4wsiA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 56.0 5.16e-01 92.2% 95.5%
4z88A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 58.0 5.45e-01 100.0% 96.9%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.67 55.0 5.28e-01 100.0% 80.0%
1wthA01 2.40.50.260 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding protein domain 0.67 53.0 4.03e-01 88.2% 74.8%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 57.0 5.46e-01 100.0% 95.0%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 53.0 4.74e-01 100.0% 85.0%
3qdfA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.63 54.0 5.26e-01 100.0% 96.6%
2haxA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 42.0 4.40e-01 84.3% 81.4%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.60 52.0 4.80e-01 100.0% 77.3%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 51.0 3.78e-01 100.0% 65.5%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.58 50.0 4.48e-01 100.0% 89.2%
3cgbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 44.0 3.23e-01 100.0% 47.6%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.54 43.0 3.31e-01 96.1% 52.9%
7kcgA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 43.0 3.35e-01 100.0% 100.0%
6j5cA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.53 45.0 3.91e-01 100.0% 72.3%
4jr7A02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 43.0 3.38e-01 96.1% 86.7%
3kewA01 2.40.30.130 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.51 39.0 3.40e-01 86.3% 76.2%
1khbA03 3.90.228.20 Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › 0.51 41.0 2.72e-01 100.0% 32.3%
1xocA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.51 39.0 3.18e-01 94.1% 82.5%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4053957 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.94 73.0 7.45e-01 100.0% 84.0%
4432330 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.92 72.0 7.27e-01 100.0% 84.0%
4170351 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.91 71.0 6.11e-01 100.0% 56.0%
4058919 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.90 70.0 7.11e-01 100.0% 84.0%
4252943 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.90 70.0 7.10e-01 100.0% 84.0%
4385345 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.90 69.0 7.04e-01 100.0% 84.0%
4534931 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.89 69.0 5.99e-01 100.0% 56.0%
4585317 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.89 69.0 6.75e-01 100.0% 76.4%
3675341 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.89 69.0 6.75e-01 100.0% 76.4%
4583465 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.89 69.0 6.99e-01 100.0% 84.0%
3436022 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.89 69.0 6.69e-01 100.0% 76.4%
4336500 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.89 68.0 6.67e-01 100.0% 76.4%
4169657 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.88 68.0 6.90e-01 100.0% 84.0%
3305577 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.88 69.0 6.77e-01 100.0% 78.2%
3785385 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.88 69.0 5.62e-01 100.0% 47.8%
4668201 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.87 67.0 6.78e-01 100.0% 84.0%
5004050 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 67.0 5.95e-01 100.0% 62.9%
3174977 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.83 68.0 5.43e-01 100.0% 47.4%
3451175 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 71.0 6.96e-01 100.0% 87.3%
4984882 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.83 73.0 6.51e-01 100.0% 70.0%
3245798 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.82 66.0 3.44e-01 94.1% 2.9%
5017637 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.81 61.0 6.00e-01 100.0% 74.5%
4932609 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 71.0 6.53e-01 100.0% 75.4%
4938828 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 67.0 6.38e-01 100.0% 76.7%
3715486 4.1.1.235 ↗ beta barrels › SH3 › SH3 › SH3 › KOW1_SPT5 0.81 73.0 5.34e-01 100.0% 71.5%
3451171 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 70.0 6.41e-01 100.0% 75.4%
4974669 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.80 61.0 5.02e-01 100.0% 46.7%
4957888 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.80 61.0 5.81e-01 100.0% 70.0%
3251940 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.79 70.0 6.15e-01 100.0% 66.7%
3939941 4.1.1.235 ↗ beta barrels › SH3 › SH3 › SH3 › KOW1_SPT5 0.79 71.0 5.20e-01 100.0% 85.4%
3917568 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.79 67.0 5.07e-01 100.0% 40.9%
3812766 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.79 70.0 6.32e-01 100.0% 85.7%
3598283 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 70.0 5.15e-01 100.0% 39.2%
3487837 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 70.0 4.65e-01 100.0% 27.5%
3675653 4.1.1.239 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.78 70.0 6.15e-01 100.0% 82.7%
4027263 4.1.1.104 ↗ beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.78 71.0 5.30e-01 100.0% 43.3%
4420173 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.78 67.0 5.83e-01 100.0% 64.0%
3825252 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 66.0 5.49e-01 100.0% 72.2%
3373298 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.75 66.0 4.21e-01 98.0% 22.9%
3267329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 69.0 5.05e-01 100.0% 42.4%
3706000 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.75 66.0 5.82e-01 100.0% 86.7%
3712451 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 69.0 5.03e-01 100.0% 41.6%
3591824 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.75 67.0 5.99e-01 100.0% 82.9%
4470603 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.75 67.0 4.62e-01 100.0% 50.9%
4104915 4.1.1.245 ↗ beta barrels › SH3 › SH3 › SH3 › SspH 0.75 64.0 6.08e-01 100.0% 80.0%
3625263 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 67.0 5.33e-01 100.0% 63.0%
3684460 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.74 64.0 5.24e-01 100.0% 84.2%
1545879 4.1.1.120 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_16 0.74 66.0 5.22e-01 100.0% 100.0%
4064354 4.1.1.245 ↗ beta barrels › SH3 › SH3 › SH3 › SspH 0.73 64.0 6.05e-01 100.0% 81.7%
4061621 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 61.0 4.08e-01 100.0% 24.6%
160765 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 64.0 5.58e-01 100.0% 81.8%
4420340 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 60.0 5.76e-01 100.0% 80.0%
2126408 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.72 63.0 5.46e-01 100.0% 63.0%
3708283 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 60.0 5.17e-01 100.0% 82.4%
4058174 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 58.0 5.37e-01 100.0% 72.3%
3448975 4.1.1.66 ↗ beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.70 62.0 5.72e-01 100.0% 86.2%
3726858 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 60.0 5.03e-01 100.0% 82.2%
3301015 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 61.0 5.68e-01 100.0% 86.2%
3511278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 55.0 4.99e-01 100.0% 65.7%
2550473 3820.1.1.0 ↗ a+b complex topology › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain 0.67 57.0 5.02e-01 100.0% 70.9%
3389662 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.67 56.0 4.94e-01 100.0% 73.8%
4966111 2.1.1.378 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF26006 0.63 50.0 4.46e-01 88.2% 97.3%
4187800 4.1.1.39 ↗ beta barrels › SH3 › SH3 › SH3 › SHD1 0.63 48.0 4.60e-01 100.0% 73.3%
5035742 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 51.0 4.95e-01 100.0% 85.0%
4938919 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 51.0 4.84e-01 100.0% 78.5%
3386779 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.59 50.0 4.51e-01 100.0% 85.1%
3604284 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 44.0 3.82e-01 92.2% 64.2%
3830290 825.1.1.0 ↗ beta complex topology › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins 0.54 45.0 3.23e-01 100.0% 56.6%