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ON453896.1__WAK79068.1__X__00006

Bact-Vir

ON453896.1__WAK79068.1__X__00006

Identity

Accession:
ON453896 ↗
Kingdom:
phage

Quality

73.1 mean pLDDT

Taxonomy

Akkermansia_phage_Moulinsart

TaxID: 2951968

Cluster

View cluster (78 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 53-148_229-253
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gnoA03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.59 32.0 3.52e-01 90.1% 64.0%
2p4vA01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.58 24.0 2.90e-01 78.5% 55.3%
5cqgA03 1.10.10.2210 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 27.0 3.21e-01 87.6% 68.4%
1ujoA00 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.54 29.0 2.77e-01 99.2% 41.0%
2vwaA00 1.20.58.1330 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein 0.53 29.0 3.21e-01 84.3% 62.6%
4nxtA01 1.10.1410.40 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 0.52 28.0 2.71e-01 90.1% 41.4%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5083373 4038.1.1.0 ↗ alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein 0.92 83.0 6.18e-01 100.0% 43.1%
2161598 2484.1.1.62 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PRP8_domainIV 0.61 37.0 2.85e-01 95.0% 26.3%
3225949 4323.1.1.1 ↗ alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.55 32.0 3.04e-01 95.9% 46.7%
3184928 3978.1.1.2 ↗ alpha complex topology › Integral membrane Acyl-CoA desaturase › Integral membrane Acyl-CoA desaturase › Integral membrane Acyl-CoA desaturase › FA_hydroxylase 0.51 38.0 3.03e-01 83.5% 36.9%
4945878 1075.3.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.51 40.0 3.23e-01 84.3% 71.7%
D2 medium residues 149-228
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 43.0 4.61e-01 88.7% 74.3%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 40.0 4.25e-01 95.0% 72.5%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.62 44.0 3.28e-01 90.0% 30.2%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.61 37.0 4.23e-01 90.0% 87.0%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.61 36.0 4.33e-01 90.0% 97.9%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 42.0 4.49e-01 91.3% 84.3%
5gv0A00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.58 49.0 4.01e-01 98.8% 92.0%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.57 36.0 3.67e-01 90.0% 64.9%
1xe0C00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.57 36.0 3.34e-01 100.0% 50.5%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 36.0 3.83e-01 91.3% 73.5%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.57 42.0 4.55e-01 88.7% 92.6%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.57 39.0 4.32e-01 98.8% 92.1%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 42.0 3.16e-01 96.2% 33.0%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 39.0 4.11e-01 91.3% 83.3%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 43.0 4.61e-01 91.3% 97.1%
3zoqC00 6.20.250.30 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.54 32.0 3.72e-01 92.5% 88.7%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 38.0 4.09e-01 93.8% 90.9%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 43.0 3.60e-01 92.5% 90.8%
2htdB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 41.0 3.54e-01 86.3% 80.6%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 33.0 3.62e-01 91.3% 83.9%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 35.0 3.27e-01 90.0% 55.8%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.51 36.0 3.26e-01 91.3% 54.1%
1s1nA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 34.0 3.82e-01 90.0% 95.0%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.50 38.0 3.03e-01 81.2% 89.1%
2kymA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 45.0 4.27e-01 100.0% 92.5%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.50 35.0 3.26e-01 90.0% 56.7%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.50 35.0 3.42e-01 100.0% 65.2%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5082725 4056.1.1.9 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_portal_2 0.88 83.0 7.59e-01 100.0% 93.0%
3981484 4056.1.1.9 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_portal_2 0.87 82.0 7.50e-01 100.0% 96.0%
3977478 4056.1.1.9 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_portal_2 0.85 80.0 7.33e-01 100.0% 94.0%
5083372 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.78 72.0 7.09e-01 100.0% 96.5%
4034031 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.74 56.0 6.11e-01 95.0% 96.9%
4998726 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 40.0 4.01e-01 91.3% 55.0%
4928169 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.70 42.0 5.04e-01 88.7% 88.9%
2784372 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.70 44.0 4.88e-01 91.3% 81.0%
4091771 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 44.0 4.96e-01 90.0% 86.7%
3616769 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.68 45.0 4.32e-01 90.0% 57.9%
3511356 4056.1.1.1 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_prot_Gp6 0.68 58.0 5.28e-01 92.5% 97.1%
5035835 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.67 43.0 4.88e-01 90.0% 86.7%
4517008 4.1.1.301 ↗ beta barrels › SH3 › SH3 › SH3 › MJ1316 0.66 46.0 4.64e-01 93.8% 72.5%
4948250 4.1.1.301 ↗ beta barrels › SH3 › SH3 › SH3 › MJ1316 0.66 47.0 5.13e-01 93.8% 92.3%
4034609 4056.1.1.1 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_prot_Gp6 0.65 59.0 5.25e-01 98.8% 96.4%
3224914 220.1.1.52 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.63 50.0 4.42e-01 93.8% 59.1%
3689024 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 38.0 3.25e-01 92.5% 37.7%
3428486 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.60 36.0 3.65e-01 91.3% 58.7%
3619619 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 37.0 3.88e-01 91.3% 71.4%
3936459 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 42.0 3.61e-01 93.8% 50.4%
4134876 4.1.1.334 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 0.56 40.0 3.17e-01 92.5% 36.4%
4189805 3369.1.1.1 ↗ beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.56 48.0 3.89e-01 98.8% 77.0%
3554995 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 39.0 4.10e-01 90.0% 81.4%
3924338 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 39.0 4.09e-01 90.0% 81.4%
3405112 220.1.1.237 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › TMEM70 0.55 45.0 4.35e-01 100.0% 80.0%
3874464 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.55 38.0 2.50e-01 91.3% 16.1%
3969006 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.55 31.0 3.86e-01 90.0% 100.0%
3498145 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 38.0 4.14e-01 91.3% 90.6%
3372822 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 38.0 3.92e-01 91.3% 77.3%
4170983 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 39.0 4.04e-01 91.3% 81.3%
3900733 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.54 41.0 4.31e-01 100.0% 92.9%
5063004 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 39.0 4.25e-01 88.7% 93.8%
3281614 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 44.0 4.06e-01 91.3% 95.2%
3968122 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.53 30.0 3.65e-01 88.7% 97.8%
3268665 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 38.0 3.35e-01 95.0% 50.8%
3806993 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.53 43.0 2.99e-01 87.5% 96.7%
5054792 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.53 31.0 3.04e-01 96.2% 52.9%
4463006 3115.2.1.0 ↗ a+b two layers › GP2-like › GP2 › GP2 0.52 29.0 3.63e-01 86.3% 97.8%
3941331 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 38.0 3.32e-01 93.8% 50.8%
1807492 387.1.3.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Colipase-like 0.51 27.0 3.47e-01 91.3% 89.4%
3496352 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 43.0 3.74e-01 91.3% 65.0%
3936225 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 36.0 3.81e-01 91.3% 85.7%
4055857 11.1.1.1110 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26306 0.50 38.0 3.53e-01 96.2% 62.9%
D3 medium residues 338-417
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3knwB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 46.0 3.60e-01 100.0% 66.1%
5k7fA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 41.0 3.40e-01 86.3% 79.0%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3974263 5094.1.1.1 ↗ a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › OmpH 0.71 51.0 4.20e-01 75.0% 65.7%
3323007 2004.1.1.29 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.58 46.0 3.17e-01 87.5% 33.7%