←Back to structures

ON453896.1__WAK79076.1__X__00014

Bact-Vir

ON453896.1__WAK79076.1__X__00014

Identity

Accession:
ON453896 ↗
Kingdom:
phage

Quality

70.1 mean pLDDT

Taxonomy

Akkermansia_phage_Moulinsart

TaxID: 2951968

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-50
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jaqA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.53 43.0 3.26e-01 100.0% 54.5%
1kkmB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 36.0 2.52e-01 76.0% 28.2%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5081655 316.1.1.27 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta 0.63 54.0 4.34e-01 98.0% 86.0%
5039586 316.1.1.27 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta 0.63 54.0 4.27e-01 98.0% 83.8%
5032268 327.2.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like 0.61 49.0 4.62e-01 88.0% 90.0%
4933310 316.1.1.2 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.61 52.0 4.08e-01 98.0% 71.8%
4967193 316.1.1.2 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.61 52.0 4.17e-01 100.0% 83.8%
5081615 316.1.1.2 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.60 53.0 4.19e-01 100.0% 81.0%
4955188 316.1.1.2 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.54 46.0 3.79e-01 98.0% 80.0%
4016921 7516.1.1.67 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Gly_transf_sug 0.51 36.0 2.41e-01 82.0% 64.0%
3189829 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.51 37.0 3.46e-01 84.0% 97.1%
3311233 7574.1.1.11 ↗ a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › DXP_synthase_N 0.51 34.0 2.16e-01 72.0% 87.1%
D2 medium residues 70-135
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1puoB00 1.20.920.50 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.73 57.0 4.42e-01 84.8% 90.8%
2c2aA01 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.70 37.0 3.29e-01 87.9% 36.7%
4lqkA00 1.10.437.20 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus 0.66 56.0 4.55e-01 98.5% 93.9%
2p0tA01 1.10.60.30 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains 0.64 56.0 5.36e-01 100.0% 98.7%
1k3kA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.60 50.0 4.01e-01 97.0% 93.2%
5zr4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 42.0 3.76e-01 90.9% 49.0%
2lefA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.57 46.0 4.33e-01 93.9% 70.9%
3kp9A01 1.20.1440.130 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › VKOR domain 0.55 41.0 3.07e-01 78.8% 93.2%
3ic9A02 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.52 36.0 3.59e-01 93.9% 68.6%
2jvwA01 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.51 42.0 4.34e-01 90.9% 100.0%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4669234 109.1.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C 0.69 50.0 4.29e-01 78.8% 87.3%
3738224 190.1.1.3 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.61 47.0 4.44e-01 84.8% 68.8%
3998355 190.1.1.25 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › PF29135 0.59 50.0 4.93e-01 97.0% 98.6%
3211492 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.56 45.0 4.22e-01 92.4% 74.1%
3568294 173.1.1.1 ↗ alpha arrays › Uteroglobin-like › Uteroglobin-like › Uteroglobin-like › Uteroglobin 0.56 43.0 4.39e-01 90.9% 84.6%
3878969 101.1.1.221 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CCDC106 0.54 41.0 3.76e-01 89.4% 63.0%
4015915 190.1.1.3 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.53 41.0 3.88e-01 84.8% 71.2%
4223250 109.4.1.112 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1 0.53 40.0 2.65e-01 81.8% 36.3%
3940616 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.53 40.0 4.23e-01 87.9% 100.0%
5051443 2004.1.1.94 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP_bind_1 0.53 40.0 2.73e-01 83.3% 37.3%
3193541 3788.1.1.26 ↗ alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › PXA 0.51 43.0 3.88e-01 97.0% 90.5%
3392623 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.51 39.0 3.74e-01 87.9% 76.2%