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ON453896.1__WAK79092.1__X__00030

Bact-Vir

ON453896.1__WAK79092.1__X__00030

Identity

Accession:
ON453896 ↗
Kingdom:
phage

Quality

83.9 mean pLDDT

Taxonomy

Akkermansia_phage_Moulinsart

TaxID: 2951968

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 118-215
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6a97C01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.62 44.0 3.99e-01 73.5% 90.1%
2i5hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 43.0 4.97e-01 82.7% 100.0%
3d2uE01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.57 41.0 3.31e-01 73.5% 87.8%
1lqvB00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.57 40.0 3.39e-01 74.5% 88.4%
2w5aA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 35.0 4.11e-01 81.6% 96.9%
3it8D01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.55 40.0 3.28e-01 75.5% 85.6%
2z7rA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 43.0 4.63e-01 89.8% 100.0%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.53 37.0 3.71e-01 72.4% 98.1%
6nobA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 39.0 2.74e-01 80.6% 38.2%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.53 26.0 3.17e-01 88.8% 74.6%
3l4rA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 37.0 3.30e-01 74.5% 74.2%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 36.0 3.20e-01 72.4% 73.9%
4pmwA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 38.0 3.96e-01 75.5% 98.9%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 26.0 3.23e-01 71.4% 87.8%
1dzkA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 36.0 3.18e-01 72.4% 76.4%
2kzxA00 3.90.1010.20 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.51 32.0 2.92e-01 89.8% 46.6%
3nwsA01 2.40.50.800 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 34.0 3.11e-01 70.4% 89.4%
3a7fA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 30.0 3.12e-01 79.6% 62.4%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3567611 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 46.0 4.14e-01 72.4% 73.3%
3485640 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 46.0 4.43e-01 74.5% 73.6%
3995180 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.60 43.0 3.44e-01 76.5% 68.3%
3863169 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.57 41.0 3.39e-01 74.5% 87.4%
3961894 2.4.1.3 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.56 41.0 3.82e-01 76.5% 85.8%
4426056 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.55 41.0 3.55e-01 78.6% 67.1%
3081033 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.55 41.0 3.81e-01 80.6% 82.7%
3289352 2.19.1.1 ↗ beta barrels › OB-fold › Putative membrane protein › Putative membrane protein › DUF3239 0.54 42.0 3.82e-01 83.7% 91.1%
1684916 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.52 36.0 3.20e-01 72.4% 73.9%
4436471 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.52 38.0 3.74e-01 76.5% 92.4%
4325086 2.4.1.11 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.51 38.0 3.73e-01 77.6% 93.2%
3815898 76.1.1.2 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Jacalin 0.51 40.0 3.69e-01 87.8% 84.4%
4426764 2.4.1.12 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.50 38.0 3.74e-01 78.6% 82.5%
3710350 206.1.1.72 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.50 44.0 3.09e-01 100.0% 58.8%
3694611 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 44.0 3.01e-01 100.0% 72.7%
D2 medium residues 23-96
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.70 51.0 5.31e-01 77.0% 93.9%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 48.0 3.93e-01 83.8% 64.2%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 45.0 4.30e-01 81.1% 97.7%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.59 43.0 3.94e-01 77.0% 66.3%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 50.0 4.44e-01 100.0% 88.6%
3kd9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 41.0 3.28e-01 78.4% 67.1%
4k7zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 41.0 2.93e-01 75.7% 79.5%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 33.0 3.84e-01 70.3% 91.5%
2arzA02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.56 38.0 3.68e-01 73.0% 68.2%
2ywlA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 37.0 2.99e-01 73.0% 76.2%
4a17E01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.54 34.0 3.25e-01 74.3% 55.3%
1shyB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 42.0 2.63e-01 87.8% 19.3%
2e8eA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.53 34.0 2.80e-01 97.3% 36.4%
5gaeG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.52 33.0 3.29e-01 77.0% 60.5%
2z1cB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 4.07e-01 94.6% 83.8%
5mmiG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.52 33.0 3.21e-01 73.0% 57.1%
1bdp001 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 39.0 2.93e-01 82.4% 69.6%
3t37A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 40.0 2.89e-01 91.9% 38.2%
1njhA00 2.70.180.10 Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › Hypothetical protein YojF 0.50 41.0 3.70e-01 93.2% 74.1%
1k0eB00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.50 42.0 2.70e-01 98.6% 87.9%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4606663 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.59 42.0 3.37e-01 75.7% 86.3%
4447158 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.59 42.0 3.29e-01 78.4% 70.0%
3576021 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 48.0 4.12e-01 98.6% 81.5%
5066398 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.57 42.0 2.73e-01 77.0% 80.0%
3909399 233.1.1.0 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain 0.57 39.0 3.81e-01 70.3% 81.2%
3797608 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 47.0 4.29e-01 100.0% 93.6%
3727615 3270.1.1.1 ↗ a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase › DUF2470 0.56 41.0 3.76e-01 77.0% 66.3%
4939039 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.56 40.0 2.91e-01 75.7% 84.7%
4939990 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.56 42.0 2.97e-01 85.1% 75.9%
5068028 316.1.1.2 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.54 42.0 3.08e-01 87.8% 83.6%
3552037 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.54 35.0 3.04e-01 87.8% 42.6%
3594856 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 40.0 3.63e-01 85.1% 81.8%
4218248 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.53 39.0 2.82e-01 79.7% 86.3%
5048822 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.53 34.0 3.32e-01 71.6% 60.0%
3315025 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.53 29.0 2.89e-01 86.5% 47.5%
3422737 5.1.2.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40 0.52 45.0 3.64e-01 98.6% 70.3%
3713703 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 39.0 3.52e-01 89.2% 80.9%
5044987 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 42.0 3.79e-01 93.2% 75.2%
4933810 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.50 36.0 2.86e-01 89.2% 38.6%