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ON453897.1__WAK79133.1__X__00028
Bact-VirON453897.1__WAK79133.1__X__00028
Identity
- Accession:
- ON453897 ↗
- Kingdom:
- phage
Quality
93.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 8-89
Domain cluster:
rep: BX571876.1__CAE14765.1__LE1-0065__00065__D1-65
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4rcjA01 | 3.10.590.10 | Alpha Beta › Roll › ph1033 like fold › ph1033 like domains | 0.63 | 47.0 | 4.00e-01 | 100.0% | 46.6% |
| 3ib5A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.59 | 53.0 | 3.50e-01 | 100.0% | 44.7% |
| 1zboA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.59 | 46.0 | 4.16e-01 | 100.0% | 61.9% |
| 4hn3A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.58 | 51.0 | 3.43e-01 | 100.0% | 47.6% |
| 2e55A00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 33.0 | 2.47e-01 | 100.0% | 22.6% |
| 4hlbA00 | 3.30.70.2960 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 40.0 | 3.91e-01 | 100.0% | 68.4% |
| 2zyzC00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.55 | 34.0 | 3.27e-01 | 100.0% | 52.1% |
| 4lg3A01 | 3.10.310.90 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.54 | 44.0 | 3.76e-01 | 100.0% | 54.5% |
| 1i74A02 | 3.10.310.20 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain | 0.54 | 37.0 | 3.30e-01 | 100.0% | 48.7% |
| 1ym5A01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.54 | 35.0 | 3.02e-01 | 100.0% | 39.7% |
| 4iy0A00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.53 | 32.0 | 2.66e-01 | 100.0% | 31.6% |
| 3ieyB00 | 3.40.1350.150 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.53 | 32.0 | 2.73e-01 | 100.0% | 31.6% |
| 1ekjA00 | 3.40.1050.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase | 0.53 | 46.0 | 3.49e-01 | 100.0% | 80.0% |
| 2x5nA01 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.52 | 39.0 | 3.07e-01 | 100.0% | 36.9% |
| 3o0fA01 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.52 | 33.0 | 2.50e-01 | 98.8% | 24.9% |
| 2fgyA03 | 3.30.1330.140 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Carboxysome Shell Carbonic Anhydrase, C-terminal domain | 0.52 | 38.0 | 3.45e-01 | 97.6% | 56.4% |
| 6r9rA01 | 3.40.50.10640 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SSO1389-like | 0.51 | 31.0 | 2.46e-01 | 100.0% | 25.0% |
| 2qb7B02 | 3.10.310.20 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain | 0.50 | 36.0 | 3.03e-01 | 100.0% | 44.3% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3250545 | 2008.1.1.18 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › eIF-3_zeta | 0.64 | 57.0 | 3.72e-01 | 100.0% | 25.8% |
| 4944368 | 2008.1.1.11 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA | 0.59 | 43.0 | 3.48e-01 | 97.6% | 40.0% |
| 4032612 | 1.1.9.45 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF3427 | 0.58 | 50.0 | 4.15e-01 | 100.0% | 53.6% |
| 5057784 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.57 | 37.0 | 3.57e-01 | 100.0% | 56.8% |
| 5047918 | 7592.1.1.0 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains | 0.56 | 34.0 | 2.93e-01 | 98.8% | 36.9% |
| 4395485 | 2008.1.1.11 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA | 0.56 | 41.0 | 3.40e-01 | 96.3% | 42.7% |
| 221616 | 327.7.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › DUF6981 | 0.55 | 40.0 | 3.91e-01 | 100.0% | 68.4% |
| 5012280 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.54 | 43.0 | 3.30e-01 | 100.0% | 35.6% |
| 3474425 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.54 | 34.0 | 3.13e-01 | 100.0% | 45.2% |
| 4212883 | 7573.1.1.4 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase | 0.53 | 32.0 | 2.42e-01 | 100.0% | 23.9% |
| 4667311 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.52 | 41.0 | 3.76e-01 | 100.0% | 62.6% |
| 4967436 | 2006.1.4.3 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NYN | 0.52 | 33.0 | 2.70e-01 | 96.3% | 30.5% |
| 3838290 | 3585.1.1.0 ↗ | a+b two layers › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain | 0.52 | 32.0 | 3.51e-01 | 93.9% | 76.9% |
| 3451490 | 1.1.9.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › SAD_SRA | 0.52 | 44.0 | 3.39e-01 | 100.0% | 57.7% |
| 4530309 | 3585.1.1.0 ↗ | a+b two layers › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain | 0.52 | 36.0 | 3.68e-01 | 98.8% | 75.0% |
| 4307642 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.52 | 33.0 | 3.08e-01 | 100.0% | 48.6% |
| 4969601 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 34.0 | 2.52e-01 | 98.8% | 24.0% |
| 3249181 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.52 | 32.0 | 3.13e-01 | 100.0% | 54.4% |
| 3598626 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.51 | 32.0 | 3.16e-01 | 100.0% | 56.7% |
| 5081637 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.51 | 37.0 | 3.12e-01 | 100.0% | 44.1% |
| 5035371 | 7573.1.1.3 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyl_synth | 0.50 | 30.0 | 2.57e-01 | 97.6% | 33.1% |
| 4932902 | 7573.1.1.1 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran | 0.50 | 30.0 | 2.60e-01 | 98.8% | 34.1% |
D2
medium
residues 90-156
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6melB01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.62 | 51.0 | 4.02e-01 | 95.5% | 66.5% |
| 1jllB01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.62 | 50.0 | 3.94e-01 | 94.0% | 66.5% |
| 1xdnA02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.61 | 51.0 | 4.01e-01 | 97.0% | 67.1% |
| 1h7sA01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.61 | 39.0 | 2.77e-01 | 85.1% | 22.3% |
| 1z2nX02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.60 | 48.0 | 4.24e-01 | 94.0% | 61.5% |
| 2e1qC10 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.60 | 49.0 | 4.04e-01 | 92.5% | 97.7% |
| 5l10B00 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.57 | 47.0 | 3.58e-01 | 94.0% | 60.6% |
| 4ac9C04 | 2.40.10.190 | Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 | 0.56 | 46.0 | 4.40e-01 | 97.0% | 98.8% |
| 1ajoA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 46.0 | 3.29e-01 | 100.0% | 90.6% |
| 4e9kA00 | 2.60.120.1350 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 | 0.53 | 40.0 | 2.82e-01 | 85.1% | 94.2% |
| 4bkwA03 | 3.30.500.40 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.51 | 40.0 | 3.40e-01 | 92.5% | 73.0% |
| 1jt8A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 39.0 | 3.49e-01 | 100.0% | 58.8% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3716751 | 206.1.3.23 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_ligase | 0.69 | 60.0 | 4.57e-01 | 97.0% | 63.9% |
| 4030967 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.61 | 43.0 | 3.59e-01 | 89.6% | 43.4% |
| 3945889 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 46.0 | 3.24e-01 | 86.6% | 33.9% |
| 4177859 | 2.1.1.84 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_N | 0.60 | 42.0 | 4.31e-01 | 100.0% | 78.5% |
| 3839028 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 42.0 | 4.32e-01 | 100.0% | 81.5% |
| 3889825 | 3570.1.1.1 ↗ | a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI | 0.57 | 46.0 | 3.61e-01 | 95.5% | 94.1% |
| 4332020 | 2.1.1.84 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_N | 0.56 | 41.0 | 3.77e-01 | 100.0% | 57.8% |
| 3577596 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.54 | 39.0 | 3.17e-01 | 80.6% | 63.4% |
| 4195041 | 4090.1.1.1 ↗ | a+b two layers › BH3703-like › BH3703-like › BH3703-like › YezG-like | 0.54 | 42.0 | 3.35e-01 | 89.6% | 54.7% |
| 5075031 | 2.1.1.83 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SfsA_N | 0.53 | 42.0 | 4.01e-01 | 100.0% | 75.0% |
| 3392679 | 3680.1.1.1 ↗ | a+b complex topology › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › SARA_C | 0.53 | 41.0 | 3.35e-01 | 94.0% | 75.2% |
| 3194295 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.52 | 41.0 | 3.56e-01 | 97.0% | 82.4% |
| 3923062 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.52 | 39.0 | 2.53e-01 | 86.6% | 95.8% |
| 3208198 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.52 | 42.0 | 3.56e-01 | 97.0% | 82.4% |
| 3959474 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.51 | 41.0 | 3.43e-01 | 97.0% | 79.3% |
| 5009745 | 302.4.1.1 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C | 0.51 | 40.0 | 3.53e-01 | 94.0% | 94.8% |
| 4250793 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.51 | 41.0 | 3.41e-01 | 97.0% | 73.6% |
| 3894207 | 3369.1.1.1 ↗ | beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal | 0.51 | 35.0 | 2.81e-01 | 74.6% | 51.3% |
| 4946583 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.51 | 41.0 | 3.58e-01 | 97.0% | 91.3% |
| 1117716 | 3680.1.1.1 ↗ | a+b complex topology › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › SARA_C | 0.51 | 40.0 | 3.40e-01 | 92.5% | 73.0% |
| 4012131 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.50 | 41.0 | 3.53e-01 | 98.5% | 84.8% |
| 2723970 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.50 | 40.0 | 3.45e-01 | 94.0% | 94.2% |