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ON453897.1__WAK79150.1__X__00045

Bact-Vir

ON453897.1__WAK79150.1__X__00045

Identity

Accession:
ON453897 ↗
Kingdom:
phage

Quality

87.6 mean pLDDT

Taxonomy

Bacteroides_phage_Versailles

TaxID: 2951969

Cluster

View cluster (78 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 11-66
PDB
Domain cluster: representative
D2 medium residues 78-89_113-245
PDB
Domain cluster: rep: OP172819.1__WAX17124.1__PF672P1_00066__00066__D121-141_157-285
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05133.20 best SPP1_portal 26.0 6.70e-06 95.9% 28.2%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 39.0 4.12e-01 72.4% 67.4%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 39.0 4.06e-01 73.8% 68.1%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 39.0 4.09e-01 74.5% 69.9%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 38.0 3.96e-01 73.8% 67.9%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 38.0 3.98e-01 70.3% 68.7%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 38.0 3.92e-01 71.7% 68.4%
1s3rA04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.57 27.0 3.09e-01 72.4% 58.6%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 38.0 3.82e-01 73.1% 66.4%
4c4vB02 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.55 41.0 3.12e-01 78.6% 55.7%
7btxA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.54 41.0 3.14e-01 80.7% 91.2%
2o62A02 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 36.0 3.77e-01 73.8% 73.0%
3nvnA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 43.0 3.16e-01 84.8% 91.9%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 35.0 2.90e-01 74.5% 39.0%
4hscX04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.51 25.0 2.82e-01 72.4% 59.1%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.50 40.0 3.33e-01 84.1% 73.7%
6qwrA01 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.50 35.0 3.26e-01 71.0% 95.8%
4csdB00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.50 39.0 3.21e-01 82.1% 84.6%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3511356 4056.1.1.1 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_prot_Gp6 0.81 56.0 6.51e-01 70.3% 100.0%
3076016 4056.1.1.4 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Head-tail_con 0.70 49.0 5.42e-01 70.3% 100.0%
4927889 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.62 26.0 3.61e-01 82.1% 76.0%
3925021 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.60 38.0 4.01e-01 74.5% 69.6%
3238997 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.58 38.0 4.02e-01 73.8% 72.2%
4992003 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.57 33.0 3.44e-01 78.6% 60.7%
None — 0.53 42.0 3.17e-01 82.8% 92.0%
3438374 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 39.0 2.89e-01 76.6% 92.8%
D3 medium residues 90-112_246-411
PDB
Domain cluster: rep: OR296439.1__WLZ21167.1__C341T2LP_00021__00021__D62-126_267-290_333-429
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05133.20 best SPP1_portal 38.7 9.40e-10 84.1% 34.8%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.57 22.0 2.88e-01 94.7% 60.6%
4a9aA01 6.10.140.1070 Special › Helix non-globular › Helix Hairpins › 0.56 17.0 2.26e-01 93.1% 45.0%
3gqcC04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.54 20.0 2.51e-01 95.2% 52.5%
5wm1A05 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.54 20.0 2.55e-01 95.2% 53.0%
2od6C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 17.0 2.32e-01 94.7% 50.5%
3gnjA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 16.0 2.11e-01 94.2% 45.0%
5j7dC00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 15.0 2.04e-01 93.7% 46.2%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3511359 4038.1.1.0 ↗ alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein 0.81 77.0 6.35e-01 100.0% 72.7%
4030791 4038.1.1.2 ↗ alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_prot_Gp6 0.76 72.0 5.82e-01 100.0% 68.7%
3980782 4038.1.1.7 ↗ alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal_2 0.74 69.0 5.64e-01 100.0% 81.5%
5024241 330.2.1.5 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.55 17.0 2.40e-01 89.9% 50.5%
4028174 302.1.1.0 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.55 20.0 2.36e-01 93.7% 44.4%
3418391 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.54 20.0 2.45e-01 95.8% 49.6%
3414649 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.54 20.0 2.37e-01 95.8% 46.7%
4230774 101.1.9.117 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_assoc 0.53 22.0 3.00e-01 79.9% 71.6%
3923333 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.52 19.0 2.34e-01 95.2% 49.2%
3818973 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.52 20.0 2.46e-01 95.2% 50.0%
3896368 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 37.0 4.14e-01 81.5% 94.6%
D4 medium residues 412-471
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3iylU02 1.10.287.1520 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.73 49.0 5.21e-01 70.0% 81.1%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.68 48.0 4.40e-01 73.3% 65.3%
5jazA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.67 47.0 4.00e-01 71.7% 86.8%
1dbzA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.67 49.0 3.45e-01 78.3% 25.0%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 44.0 4.35e-01 81.7% 65.1%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.60 56.0 4.38e-01 100.0% 96.6%
2whnA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.59 41.0 3.49e-01 76.7% 40.9%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3506288 4177.1.1.6 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3_WASP_bdg 0.78 53.0 3.48e-01 70.0% 22.4%
3410594 4177.1.1.6 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3_WASP_bdg 0.76 51.0 3.43e-01 70.0% 23.4%
3199836 195.1.1.3 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NSUN5_N 0.70 48.0 3.85e-01 73.3% 36.5%
4977912 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.69 52.0 3.62e-01 80.0% 26.7%
3269934 509.1.1.0 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.65 47.0 3.94e-01 75.0% 58.9%
3973283 325.1.7.27 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › HH_AprE 0.57 52.0 3.60e-01 100.0% 36.4%