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ON453897.1__WAK79151.1__X__00046

Bact-Vir

ON453897.1__WAK79151.1__X__00046

Identity

Accession:
ON453897 ↗
Kingdom:
phage

Quality

76.3 mean pLDDT

Taxonomy

Bacteroides_phage_Versailles

TaxID: 2951969

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-91
PDB
Domain cluster: rep: scnpilot_solids2_trim150_scaffold_133_prodigal-single.1__X__X__00035__D13-85
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6pfzD02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 38.0 2.68e-01 82.7% 19.1%
2xfmA00 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.57 49.0 4.20e-01 90.1% 71.7%
2wkcB00 2.40.50.400 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Lactococcus phage single-stranded DNA binding protein 0.56 43.0 4.17e-01 81.5% 96.6%
1h7zA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.55 35.0 2.71e-01 70.4% 27.2%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 3.67e-01 87.7% 93.9%
1dpgA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 39.0 2.73e-01 80.2% 61.2%
3bjsA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 40.0 3.60e-01 82.7% 79.5%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.52 44.0 3.51e-01 95.1% 45.8%
5mmjj00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.52 36.0 3.45e-01 72.8% 86.9%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 37.0 3.35e-01 82.7% 53.9%
8gjaD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 39.0 2.81e-01 84.0% 83.0%
1kiaA01 3.30.46.10 Alpha Beta › 2-Layer Sandwich › Glycine N-methyltransferase; chain A, domain 1 › Glycine N-methyltransferase, chain A, domain 1 0.51 37.0 3.68e-01 77.8% 96.4%
1s3rA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.51 28.0 3.18e-01 90.1% 75.5%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.51 41.0 2.81e-01 88.9% 89.3%
3luqB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 36.0 3.29e-01 76.5% 92.1%
2vl6A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 38.0 3.50e-01 82.7% 99.1%
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.51 34.0 3.24e-01 70.4% 84.3%
3ko2A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.50 36.0 3.01e-01 79.0% 56.5%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3607981 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 46.0 4.84e-01 90.1% 79.7%
3812766 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.65 48.0 5.12e-01 90.1% 88.6%
3251426 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.64 46.0 4.80e-01 76.5% 89.3%
4012560 220.1.1.9 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Voldacs 0.63 49.0 3.73e-01 85.2% 48.7%
3796739 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.63 44.0 4.51e-01 74.1% 81.2%
3481495 2.1.1.80 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.61 46.0 3.71e-01 82.7% 97.6%
4036210 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.61 48.0 3.65e-01 87.7% 62.0%
3782292 4.1.1.170 ↗ beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.61 47.0 4.74e-01 90.1% 82.5%
3222710 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.59 43.0 4.45e-01 79.0% 83.3%
4972327 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.58 46.0 4.38e-01 85.2% 91.6%
4013325 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.58 47.0 4.15e-01 92.6% 70.4%
3729690 4.1.1.170 ↗ beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.57 48.0 4.55e-01 90.1% 80.0%
3706604 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.57 42.0 4.16e-01 77.8% 83.5%
3244973 11.1.1.673 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CUT_N 0.57 40.0 3.43e-01 72.8% 79.2%
3251381 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.57 40.0 4.42e-01 75.3% 93.8%
3212073 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.57 47.0 3.75e-01 88.9% 60.6%
3248736 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.57 41.0 4.12e-01 76.5% 77.5%
3255418 2011.1.1.8 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.56 47.0 3.06e-01 92.6% 82.9%
3586662 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 47.0 4.18e-01 95.1% 73.3%
3788996 7502.1.1.2 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix 0.56 43.0 3.14e-01 84.0% 74.6%
3436820 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.55 42.0 3.42e-01 85.2% 44.7%
3593377 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 46.0 4.17e-01 95.1% 93.0%
3585474 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 45.0 4.11e-01 90.1% 68.6%
3663237 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 40.0 4.09e-01 82.7% 81.2%
3968190 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 40.0 3.85e-01 81.5% 100.0%
4229976 314.1.1.11 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.53 45.0 3.35e-01 96.3% 90.5%
3477183 220.1.1.9 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Voldacs 0.53 41.0 3.56e-01 85.2% 63.1%
3559265 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.52 40.0 3.32e-01 82.7% 93.8%
4341249 314.1.1.11 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.52 44.0 3.23e-01 95.1% 91.6%
3555125 2.1.1.80 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.52 40.0 3.41e-01 82.7% 83.8%
5034752 7503.1.1.0 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain 0.51 43.0 3.36e-01 97.5% 73.4%
4077803 314.1.1.11 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.51 43.0 3.19e-01 97.5% 87.8%
4478726 314.1.1.11 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.50 43.0 3.19e-01 97.5% 93.9%
3677000 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.50 41.0 3.44e-01 92.6% 98.7%
3779854 7026.1.1.19 ↗ beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › VPS13_M 0.50 38.0 2.33e-01 82.7% 28.5%
4927645 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.50 37.0 3.32e-01 77.8% 96.5%
3941958 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.50 39.0 3.83e-01 88.9% 76.7%
3739406 330.1.1.9 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dcr1-like_dsRNA-bd_dom 0.50 39.0 3.58e-01 82.7% 65.7%
3731361 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 41.0 3.08e-01 93.8% 97.3%