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ON453897.1__WAK79159.1__X__00054

Bact-Vir

ON453897.1__WAK79159.1__X__00054

Identity

Accession:
ON453897 ↗
Kingdom:
phage

Quality

94.6 mean pLDDT

Taxonomy

Bacteroides_phage_Versailles

TaxID: 2951969

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-93
PDB
Domain cluster: rep: GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00630__D3-83
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3u97A00 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.68 52.0 5.53e-01 100.0% 96.1%
3kw2A01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.61 40.0 4.51e-01 79.3% 89.7%
7vd7A01 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.61 49.0 4.97e-01 100.0% 90.2%
4xq7A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.60 42.0 3.61e-01 75.0% 84.0%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 44.0 4.56e-01 100.0% 88.1%
1uwvA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 29.0 3.21e-01 81.5% 63.0%
1oj5A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 47.0 4.57e-01 100.0% 89.5%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 29.0 3.52e-01 92.4% 86.8%
5m8cB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 39.0 2.68e-01 76.1% 69.6%
2lttA00 2.30.31.70 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.53 34.0 3.65e-01 93.5% 78.4%
3a58A01 2.30.29.90 Mainly Beta › Roll › PH-domain like › 0.53 43.0 3.54e-01 100.0% 47.7%
1wlgA02 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.53 37.0 3.25e-01 72.8% 48.6%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 31.0 3.59e-01 71.7% 93.2%
3l48A01 2.60.40.2070 Mainly Beta › Sandwich › Immunoglobulin-like › PapC, C-terminal domain 0.51 38.0 4.09e-01 97.8% 100.0%
1yezA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 32.0 3.64e-01 78.3% 86.8%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.51 39.0 3.77e-01 98.9% 72.0%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4095696 2.1.1.100 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 0.72 31.0 3.52e-01 100.0% 50.7%
5037614 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 33.0 3.41e-01 100.0% 44.4%
4032266 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.70 30.0 3.65e-01 98.9% 58.3%
1146563 4312.1.1.1 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › BrnT_toxin 0.68 51.0 5.55e-01 100.0% 98.7%
3287567 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.67 54.0 5.47e-01 100.0% 88.9%
3352390 5.1.4.508 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30952 0.66 43.0 2.95e-01 100.0% 19.7%
5083897 4312.1.1.1 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › BrnT_toxin 0.64 52.0 5.17e-01 100.0% 86.7%
4937872 239.5.1.1 ↗ beta barrels › Ribosomal protein L25-like › 40S ribosomal protein S3A N-terminal domain › 40S ribosomal protein S3A N-terminal domain › Ribosomal_S3Ae 0.63 45.0 4.84e-01 100.0% 85.0%
5068076 239.5.1.1 ↗ beta barrels › Ribosomal protein L25-like › 40S ribosomal protein S3A N-terminal domain › 40S ribosomal protein S3A N-terminal domain › Ribosomal_S3Ae 0.63 45.0 4.41e-01 100.0% 68.0%
5070792 239.5.1.1 ↗ beta barrels › Ribosomal protein L25-like › 40S ribosomal protein S3A N-terminal domain › 40S ribosomal protein S3A N-terminal domain › Ribosomal_S3Ae 0.63 45.0 4.69e-01 100.0% 80.0%
4660526 239.5.1.1 ↗ beta barrels › Ribosomal protein L25-like › 40S ribosomal protein S3A N-terminal domain › 40S ribosomal protein S3A N-terminal domain › Ribosomal_S3Ae 0.63 45.0 4.81e-01 100.0% 85.0%
4623122 239.5.1.1 ↗ beta barrels › Ribosomal protein L25-like › 40S ribosomal protein S3A N-terminal domain › 40S ribosomal protein S3A N-terminal domain › Ribosomal_S3Ae 0.63 45.0 4.80e-01 100.0% 85.0%
4949238 239.5.1.1 ↗ beta barrels › Ribosomal protein L25-like › 40S ribosomal protein S3A N-terminal domain › 40S ribosomal protein S3A N-terminal domain › Ribosomal_S3Ae 0.63 45.0 3.57e-01 100.0% 39.3%
4947027 239.5.1.1 ↗ beta barrels › Ribosomal protein L25-like › 40S ribosomal protein S3A N-terminal domain › 40S ribosomal protein S3A N-terminal domain › Ribosomal_S3Ae 0.62 44.0 4.53e-01 100.0% 75.6%
5064379 239.5.1.1 ↗ beta barrels › Ribosomal protein L25-like › 40S ribosomal protein S3A N-terminal domain › 40S ribosomal protein S3A N-terminal domain › Ribosomal_S3Ae 0.62 44.0 4.87e-01 100.0% 90.7%
3603774 239.5.1.1 ↗ beta barrels › Ribosomal protein L25-like › 40S ribosomal protein S3A N-terminal domain › 40S ribosomal protein S3A N-terminal domain › Ribosomal_S3Ae 0.62 44.0 4.51e-01 100.0% 75.6%
4327981 239.5.1.1 ↗ beta barrels › Ribosomal protein L25-like › 40S ribosomal protein S3A N-terminal domain › 40S ribosomal protein S3A N-terminal domain › Ribosomal_S3Ae 0.62 44.0 4.22e-01 100.0% 64.8%
4156361 239.5.1.1 ↗ beta barrels › Ribosomal protein L25-like › 40S ribosomal protein S3A N-terminal domain › 40S ribosomal protein S3A N-terminal domain › Ribosomal_S3Ae 0.62 44.0 4.49e-01 100.0% 75.6%
3718410 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 47.0 3.04e-01 100.0% 18.1%
5028290 239.5.1.1 ↗ beta barrels › Ribosomal protein L25-like › 40S ribosomal protein S3A N-terminal domain › 40S ribosomal protein S3A N-terminal domain › Ribosomal_S3Ae 0.60 43.0 4.58e-01 100.0% 85.0%
None — 0.60 38.0 2.62e-01 100.0% 17.6%
3437841 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.60 38.0 2.54e-01 100.0% 16.2%
3781119 5.1.4.97 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rrn6_beta-prop 0.59 43.0 2.75e-01 100.0% 16.3%
4240534 239.5.1.1 ↗ beta barrels › Ribosomal protein L25-like › 40S ribosomal protein S3A N-terminal domain › 40S ribosomal protein S3A N-terminal domain › Ribosomal_S3Ae 0.58 45.0 4.28e-01 100.0% 70.5%
4587008 239.5.1.1 ↗ beta barrels › Ribosomal protein L25-like › 40S ribosomal protein S3A N-terminal domain › 40S ribosomal protein S3A N-terminal domain › Ribosomal_S3Ae 0.58 44.0 4.19e-01 100.0% 67.3%
4919518 239.5.1.1 ↗ beta barrels › Ribosomal protein L25-like › 40S ribosomal protein S3A N-terminal domain › 40S ribosomal protein S3A N-terminal domain › Ribosomal_S3Ae 0.58 44.0 4.42e-01 100.0% 77.9%
4984760 239.5.1.1 ↗ beta barrels › Ribosomal protein L25-like › 40S ribosomal protein S3A N-terminal domain › 40S ribosomal protein S3A N-terminal domain › Ribosomal_S3Ae 0.58 43.0 4.38e-01 100.0% 80.0%
3278218 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.58 47.0 4.80e-01 96.7% 93.3%
5044451 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 43.0 4.57e-01 100.0% 91.3%
3595795 239.5.1.0 ↗ beta barrels › Ribosomal protein L25-like › 40S ribosomal protein S3A N-terminal domain › 40S ribosomal protein S3A N-terminal domain 0.57 45.0 4.26e-01 100.0% 70.0%
3719036 59.1.1.0 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like 0.57 41.0 4.55e-01 100.0% 98.6%
3167022 5.1.4.31 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lgl_C 0.57 41.0 2.60e-01 100.0% 14.0%
4375915 239.5.1.1 ↗ beta barrels › Ribosomal protein L25-like › 40S ribosomal protein S3A N-terminal domain › 40S ribosomal protein S3A N-terminal domain › Ribosomal_S3Ae 0.57 45.0 4.38e-01 100.0% 77.0%
3233789 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.56 40.0 2.61e-01 73.9% 19.2%
4257882 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.56 30.0 3.48e-01 85.9% 72.3%
4660839 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.55 30.0 3.50e-01 87.0% 73.8%
4374668 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.55 29.0 3.40e-01 85.9% 71.9%
4490822 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.55 30.0 3.44e-01 90.2% 73.8%
4051926 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.54 30.0 3.44e-01 87.0% 73.8%
4599895 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 30.0 3.48e-01 87.0% 76.9%
4498774 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 29.0 3.30e-01 81.5% 70.8%
3194191 5.1.4.97 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rrn6_beta-prop 0.54 42.0 2.64e-01 100.0% 15.1%
3698931 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.54 34.0 3.08e-01 100.0% 45.4%
4968953 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 46.0 4.25e-01 100.0% 88.0%
4289541 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.53 33.0 3.55e-01 84.8% 74.7%
3363024 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 32.0 3.56e-01 75.0% 78.6%
3194958 236.1.1.0 ↗ beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain 0.52 39.0 3.35e-01 100.0% 47.7%
4424090 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 33.0 3.55e-01 81.5% 77.3%
4024816 206.1.1.74 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.52 40.0 2.63e-01 84.8% 26.3%
4097955 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.51 27.0 2.93e-01 80.4% 56.2%
3647116 220.1.1.78 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.50 41.0 3.78e-01 91.3% 81.6%