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ON453897.1__WAK79173.1__X__00068

Bact-Vir

ON453897.1__WAK79173.1__X__00068

Identity

Accession:
ON453897 ↗
Kingdom:
phage

Quality

89.6 mean pLDDT

Taxonomy

Bacteroides_phage_Versailles

TaxID: 2951969

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-82
PDB
Domain cluster: rep: OP172670.1__WAX07005.1__BF503P1_00058__00058__D11-73
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kbmB01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.71 50.0 5.58e-01 90.7% 100.0%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 55.0 5.95e-01 97.3% 100.0%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 51.0 5.45e-01 98.7% 100.0%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.66 57.0 4.75e-01 96.0% 60.6%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 50.0 5.26e-01 98.7% 97.0%
2bi0A01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.65 51.0 4.03e-01 85.3% 98.0%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 50.0 5.16e-01 92.0% 91.4%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 45.0 4.75e-01 93.3% 83.3%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 52.0 4.55e-01 96.0% 58.1%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.63 49.0 5.00e-01 88.0% 86.7%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 50.0 5.15e-01 98.7% 95.7%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.61 54.0 4.86e-01 100.0% 83.7%
2crfA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 46.0 3.97e-01 84.0% 72.8%
4hj1A01 2.60.98.50 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › 0.59 50.0 3.91e-01 94.7% 72.9%
2z3zA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.59 43.0 2.74e-01 78.7% 32.1%
2x8fA02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.58 45.0 4.23e-01 85.3% 68.4%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 50.0 5.08e-01 96.0% 98.6%
3kh8B01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 40.0 3.20e-01 72.0% 86.4%
2ia7A00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 45.0 3.98e-01 85.3% 74.8%
4gl6A01 3.10.450.570 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Domain of unknown function (DUF5037), N-terminal subdomain 0.56 42.0 4.11e-01 81.3% 84.1%
7qzqA01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.55 45.0 2.95e-01 89.3% 96.1%
1x05A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 42.0 3.58e-01 84.0% 65.9%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.55 43.0 3.37e-01 85.3% 76.5%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.55 44.0 2.85e-01 89.3% 29.1%
4c47A01 2.60.40.1620 Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like 0.54 44.0 3.86e-01 93.3% 92.6%
2yh6D00 3.30.530.50 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.54 41.0 3.77e-01 86.7% 78.2%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 43.0 3.55e-01 88.0% 88.7%
1e50B00 2.40.250.10 Mainly Beta › Beta Barrel › Polyomavirus Enhancer Binding Protein 2; Chain: A; › Core binding factor, beta subunit 0.54 44.0 3.76e-01 93.3% 66.9%
3soyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 39.0 3.21e-01 77.3% 85.2%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 36.0 3.85e-01 84.0% 87.1%
2bz0A00 3.40.50.10990 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTP cyclohydrolase II 0.52 36.0 2.82e-01 72.0% 79.8%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.52 37.0 2.94e-01 80.0% 34.9%
3mcrA00 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.51 43.0 3.46e-01 100.0% 46.1%
3omlA03 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 37.0 2.66e-01 80.0% 63.3%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.51 36.0 3.24e-01 80.0% 50.9%
4ojdH01 2.60.98.60 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Cell-cell fusogen EFF/AFF, domain 1 0.51 42.0 3.41e-01 98.7% 90.9%
7ffnN01 2.60.40.3200 Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, A domain 0.50 39.0 3.03e-01 86.7% 63.0%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 44.0 2.72e-01 96.0% 36.5%
2pn5A03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 37.0 3.40e-01 81.3% 89.5%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3666338 219.1.1.41 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C78 0.77 69.0 4.49e-01 98.7% 42.1%
4976092 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 63.0 5.91e-01 93.3% 74.4%
4051081 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.75 57.0 6.18e-01 92.0% 100.0%
3757490 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.73 67.0 6.17e-01 100.0% 90.5%
3821751 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.72 57.0 5.59e-01 97.3% 80.0%
4954224 4.1.1.182 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2097 0.72 64.0 5.96e-01 100.0% 82.1%
4851967 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.71 53.0 5.66e-01 92.0% 96.8%
5002173 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 49.0 4.57e-01 70.7% 90.0%
3557649 4.8.1.20 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PWP3A-B_N 0.70 52.0 4.69e-01 90.7% 57.1%
3414877 4.27.1.1 ↗ beta barrels › SH3 › Mitoribosomal protein mS34 › Mitoribosomal protein mS34 › MRP-S34 0.69 62.0 4.90e-01 98.7% 54.7%
3750522 4.1.1.218 ↗ beta barrels › SH3 › SH3 › SH3 › PWP3A-B_N 0.69 51.0 4.49e-01 78.7% 53.6%
3645842 4.1.1.162 ↗ beta barrels › SH3 › SH3 › SH3 › DUF502 0.67 50.0 4.95e-01 80.0% 82.5%
3167531 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.67 58.0 4.76e-01 96.0% 59.3%
4336471 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.67 45.0 4.13e-01 70.7% 79.0%
3465486 4.25.1.0 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.67 56.0 4.27e-01 93.3% 84.0%
3934278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 59.0 5.14e-01 100.0% 67.8%
4073200 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.66 52.0 5.51e-01 98.7% 100.0%
2157301 4.1.1.78 ↗ beta barrels › SH3 › SH3 › SH3 › TTD 0.65 53.0 5.38e-01 89.3% 90.4%
3698588 4.27.1.0 ↗ beta barrels › SH3 › Mitoribosomal protein mS34 › Mitoribosomal protein mS34 0.64 56.0 4.46e-01 100.0% 51.3%
3572423 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.64 52.0 4.50e-01 94.7% 56.7%
4946993 4.1.1.479 ↗ beta barrels › SH3 › SH3 › SH3 › eIF-5a 0.64 50.0 5.19e-01 98.7% 94.3%
3595651 4.1.1.309 ↗ beta barrels › SH3 › SH3 › SH3 › MRP-S34 0.63 56.0 4.83e-01 100.0% 65.8%
3643549 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.63 49.0 4.82e-01 96.0% 81.2%
4995812 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.62 47.0 4.34e-01 82.7% 88.0%
4942589 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.61 50.0 5.18e-01 98.7% 95.7%
4931072 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.61 48.0 4.94e-01 98.7% 94.3%
3219409 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.66e-01 88.0% 88.9%
3297966 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.61 53.0 4.62e-01 100.0% 83.3%
3399034 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 55.0 4.21e-01 100.0% 77.6%
3483489 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 48.0 4.81e-01 98.7% 88.0%
4990492 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 39.0 4.44e-01 82.7% 98.0%
5049449 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 39.0 4.48e-01 81.3% 100.0%
3928256 2007.2.3.21 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase, PTP-SAK 0.60 50.0 3.33e-01 93.3% 32.6%
4997059 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.60 49.0 5.00e-01 98.7% 93.3%
4950455 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 45.0 4.63e-01 81.3% 95.7%
3927145 2007.2.3.21 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase, PTP-SAK 0.58 49.0 3.24e-01 93.3% 33.4%
3614906 4.26.1.8 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Saf4_Yju2 0.58 42.0 4.40e-01 78.7% 98.6%
5018717 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 38.0 4.24e-01 82.7% 100.0%
4385734 5.1.4.567 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Helveticin_J 0.55 46.0 3.03e-01 94.7% 31.8%
None — 0.54 44.0 3.01e-01 93.3% 41.3%
None — 0.54 44.0 3.00e-01 93.3% 32.4%
4389067 2003.1.2.28 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lys_Orn_oxgnase 0.54 47.0 2.88e-01 96.0% 35.8%
3938060 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.54 44.0 3.46e-01 93.3% 51.4%
3435224 243.3.1.19 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.54 40.0 4.33e-01 82.7% 92.3%
4429847 3675.1.1.1 ↗ a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › GyrB_insert 0.54 45.0 3.55e-01 94.7% 51.5%
3924122 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.53 44.0 2.94e-01 94.7% 29.4%
5029255 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.53 44.0 4.07e-01 98.7% 99.0%
3736443 2003.1.2.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.53 46.0 3.04e-01 96.0% 45.4%
3938274 2003.1.3.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.53 46.0 3.35e-01 96.0% 75.1%
3577955 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.53 38.0 2.70e-01 81.3% 21.8%
3367557 4099.1.1.41 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › FmiP_Thoc5 0.53 44.0 3.70e-01 96.0% 87.4%
3837783 3291.1.1.50 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › FmiP_Thoc5 0.52 42.0 3.72e-01 89.3% 82.7%
3832622 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.51 39.0 2.64e-01 84.0% 26.3%
3578584 5.1.8.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.51 42.0 3.71e-01 90.7% 76.4%
3278704 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.51 38.0 3.83e-01 84.0% 91.3%
3586428 306.3.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like 0.51 35.0 3.16e-01 72.0% 72.5%
3725926 2.1.1.94 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TLP1_add_C 0.51 35.0 3.36e-01 70.7% 89.4%