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ON453899.1__WAK79320.1__X__00032

Bact-Vir

ON453899.1__WAK79320.1__X__00032

Identity

Accession:
ON453899 ↗
Kingdom:
phage

Quality

76.2 mean pLDDT

Taxonomy

TaxID: 2951971

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-107
PDB
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3f3bA00 2.40.10.370 Mainly Beta › Beta Barrel › Thrombin, subunit H › Protein of unknown function DUF3599 0.71 55.0 5.33e-01 80.6% 95.7%
4i86A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.70 48.0 4.89e-01 80.6% 71.6%
2o8lA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.65 50.0 5.08e-01 80.6% 82.2%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 50.0 4.41e-01 80.6% 61.9%
2i02A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 46.0 4.18e-01 79.6% 75.0%
6j0qA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.60 41.0 4.09e-01 71.8% 82.6%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.52 38.0 3.42e-01 76.7% 88.1%
1d7bA00 2.60.40.1210 Mainly Beta › Sandwich › Immunoglobulin-like › Cellobiose dehydrogenase, cytochrome domain 0.52 41.0 3.44e-01 86.4% 63.8%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4105189 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.78 53.0 5.57e-01 80.6% 75.8%
4318415 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.77 55.0 5.72e-01 80.6% 80.0%
4246480 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.76 51.0 5.37e-01 80.6% 75.8%
4500974 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.75 57.0 5.37e-01 80.6% 67.5%
5003311 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.74 56.0 5.47e-01 77.7% 98.2%
3164932 1.1.12.1 beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.74 51.0 4.79e-01 80.6% 58.4%
5034906 205.1.1.16 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 0.74 47.0 4.07e-01 88.3% 42.5%
4214150 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.74 51.0 5.04e-01 81.6% 66.4%
4988096 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.73 58.0 5.60e-01 82.5% 97.4%
4073608 1.1.5.57 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Mycop_pep_DUF31 0.72 55.0 4.56e-01 81.6% 66.7%
3618810 1.1.8.1 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.71 52.0 4.98e-01 75.7% 73.7%
3288253 1.1.13.55 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF4873 0.68 51.0 5.42e-01 79.6% 90.0%
3287150 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.67 50.0 3.90e-01 78.6% 38.6%
184486 1.1.13.26 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › GpP-like_1st 0.63 46.0 5.08e-01 77.7% 97.5%
3971176 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.62 48.0 3.98e-01 80.6% 82.9%
3610382 216.1.1.3 a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.51 44.0 3.90e-01 100.0% 90.6%
4963620 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.50 30.0 3.26e-01 89.3% 70.6%
3393657 243.3.1.35 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF229 0.50 36.0 3.38e-01 73.8% 78.4%
D2 high residues 112-205
PDB
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pp6A02 2.40.10.210 Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins (gpFII-like) 0.82 53.0 6.41e-01 100.0% 98.4%
2ey4D00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.79 48.0 5.32e-01 74.5% 76.0%
2j5uA02 2.40.10.340 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 1 0.75 48.0 5.04e-01 78.7% 72.6%
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.73 57.0 6.20e-01 98.9% 98.7%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.71 64.0 6.34e-01 96.8% 99.0%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.70 54.0 5.07e-01 100.0% 67.6%
3f3bA00 2.40.10.370 Mainly Beta › Beta Barrel › Thrombin, subunit H › Protein of unknown function DUF3599 0.69 63.0 5.88e-01 100.0% 91.3%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.68 41.0 4.15e-01 70.2% 60.4%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 56.0 5.23e-01 100.0% 73.7%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.65 38.0 4.25e-01 73.4% 74.6%
2nwaA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.65 44.0 4.81e-01 97.9% 86.7%
3fanA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.65 42.0 4.61e-01 100.0% 83.6%
2kcaA00 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.64 56.0 5.38e-01 100.0% 88.1%
2zu2A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 48.0 4.79e-01 100.0% 76.5%
4z85A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 59.0 4.53e-01 100.0% 59.9%
2z7rA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 41.0 4.30e-01 100.0% 73.8%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 58.0 4.84e-01 100.0% 73.7%
4fg9A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 39.0 4.20e-01 100.0% 75.9%
6f2mA02 2.40.30.290 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.61 43.0 4.50e-01 94.7% 79.3%
1uscA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 56.0 4.49e-01 100.0% 65.7%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.60 49.0 4.50e-01 100.0% 67.2%
3b5mA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 55.0 5.06e-01 100.0% 87.4%
5hesA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 37.0 3.94e-01 70.2% 71.6%
2ra1A04 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 38.0 3.77e-01 71.3% 62.9%
4ympA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 42.0 4.02e-01 100.0% 64.3%
3f3zA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 40.0 4.30e-01 100.0% 82.9%
2aneH00 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.57 43.0 4.14e-01 79.8% 79.8%
1wxrA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.57 51.0 3.74e-01 100.0% 77.8%
4gt4B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 38.0 4.06e-01 100.0% 79.8%
3szeA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 50.0 3.50e-01 100.0% 65.9%
6vg3A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 38.0 3.94e-01 71.3% 81.1%
3gniB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 40.0 4.16e-01 100.0% 80.9%
2x8kA01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.55 49.0 4.72e-01 100.0% 86.7%
4redB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 39.0 4.08e-01 98.9% 83.3%
2l8kA00 3.30.1330.220 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Arterivirus nonstructural protein 7 alpha 0.54 38.0 3.45e-01 72.3% 74.0%
7cayA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.54 40.0 3.97e-01 78.7% 77.0%
2kmwA01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 37.0 3.66e-01 73.4% 74.0%
7zvsB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 37.0 3.66e-01 71.3% 71.7%
1xf1A03 2.60.40.1710 Mainly Beta › Sandwich › Immunoglobulin-like › Subtilisin-like superfamily 0.53 41.0 3.65e-01 81.9% 64.9%
2yweA04 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 33.0 3.09e-01 91.5% 50.9%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.52 39.0 3.63e-01 80.9% 68.8%
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.52 45.0 3.85e-01 100.0% 81.2%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4157526 1.1.12.1 beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.80 50.0 4.66e-01 100.0% 52.2%
4032900 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.77 72.0 6.91e-01 100.0% 96.2%
4271107 1.1.12.1 beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.77 50.0 4.63e-01 100.0% 53.9%
3975275 1.1.13.15 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Gifsy-2 0.76 55.0 5.54e-01 100.0% 73.7%
3590201 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.76 70.0 6.70e-01 100.0% 91.7%
3587815 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.76 70.0 6.71e-01 100.0% 92.4%
3788348 1.1.7.81 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.75 56.0 5.23e-01 77.7% 79.1%
4034130 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.75 68.0 6.73e-01 100.0% 93.0%
3058418 1.1.13.2 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_attach 0.75 62.0 6.06e-01 100.0% 80.4%
3943285 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.75 70.0 6.63e-01 100.0% 96.3%
4316037 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.74 56.0 5.25e-01 100.0% 66.4%
185291 1.1.13.20 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.73 58.0 6.28e-01 100.0% 98.8%
3946118 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.71 49.0 5.46e-01 71.3% 98.7%
4669352 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.71 65.0 6.15e-01 100.0% 83.6%
5056905 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.71 48.0 4.92e-01 73.4% 72.2%
3187444 1.1.7.81 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.71 53.0 4.89e-01 77.7% 78.3%
3384073 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 51.0 4.67e-01 75.5% 66.7%
4316228 1.1.12.1 beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.69 43.0 4.14e-01 100.0% 55.2%
169594 1.1.13.14 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF3599 0.69 63.0 5.88e-01 100.0% 91.3%
4395103 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 45.0 4.63e-01 78.7% 70.0%
4014420 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 49.0 4.92e-01 96.8% 73.7%
3963908 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.67 39.0 4.34e-01 87.2% 75.7%
4879695 1.1.13.29 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_gp28 0.66 61.0 5.42e-01 100.0% 75.8%
3949305 1.1.13.54 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_L 0.65 60.0 5.12e-01 100.0% 92.4%
4214150 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.64 47.0 4.47e-01 100.0% 65.5%
3552412 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.64 42.0 4.15e-01 72.3% 63.0%
119197 1.1.13.3 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.64 56.0 5.38e-01 100.0% 88.1%
1725861 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.63 59.0 4.53e-01 100.0% 59.9%
3972102 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.63 51.0 5.07e-01 96.8% 81.0%
4852372 1.1.5.19 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C30 0.63 48.0 3.77e-01 100.0% 39.8%
4260208 1.1.13.62 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF27197 0.62 57.0 5.47e-01 97.9% 100.0%
5075917 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.62 58.0 4.84e-01 100.0% 75.3%
4333010 1.1.7.70 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_GLAA-B_II 0.61 41.0 4.56e-01 71.3% 88.0%
1883205 1.1.13.19 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Caud_tail_N 0.60 55.0 5.21e-01 100.0% 93.6%
4211588 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 44.0 2.80e-01 77.7% 19.6%
4996474 873.1.1.22 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF25939 0.57 50.0 4.01e-01 96.8% 84.7%
4358643 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.57 44.0 3.30e-01 80.9% 40.9%
4154363 1.1.12.1 beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.57 43.0 3.90e-01 100.0% 59.2%
3393300 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.56 39.0 3.83e-01 73.4% 69.5%
1096951 1.1.5.13 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S6 0.56 50.0 3.66e-01 100.0% 78.7%
3399963 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.55 38.0 3.55e-01 73.4% 64.2%
3801941 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.54 35.0 3.33e-01 85.1% 53.0%
4032585 884.1.1.1 a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.54 31.0 3.31e-01 94.7% 62.4%
3625411 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 34.0 3.23e-01 73.4% 53.9%
4475003 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.51 44.0 3.18e-01 93.6% 40.0%
3971176 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.51 45.0 3.70e-01 100.0% 81.1%
4109849 4186.1.1.1 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.51 37.0 3.92e-01 100.0% 87.1%
4171744 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.51 43.0 3.17e-01 93.6% 36.6%
1099000 1.1.5.19 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C30 0.50 44.0 3.59e-01 100.0% 90.8%