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ON453899.1__WAK79370.1__X__00082
Bact-VirON453899.1__WAK79370.1__X__00082
Identity
- Accession:
- ON453899 ↗
- Kingdom:
- phage
Quality
76.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 47-145
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1b24A01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.63 | 46.0 | 4.70e-01 | 75.8% | 92.6% |
| 2l01A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 42.0 | 4.64e-01 | 70.7% | 96.1% |
| 3l7wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 43.0 | 4.29e-01 | 78.8% | 73.3% |
| 2kloA00 | 1.10.10.1420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA replication factor Cdt1, C-terminal WH domain | 0.59 | 51.0 | 4.67e-01 | 100.0% | 73.2% |
| 1f2uB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 40.0 | 3.55e-01 | 71.7% | 73.8% |
| 3c0wA02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.54 | 39.0 | 3.87e-01 | 75.8% | 81.6% |
| 5mmjh01 | 3.30.1370.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.54 | 37.0 | 4.11e-01 | 71.7% | 93.3% |
| 1ewqB01 | 3.40.1170.10 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I | 0.53 | 34.0 | 3.30e-01 | 84.8% | 54.2% |
| 7dl8C01 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.53 | 40.0 | 4.15e-01 | 79.8% | 91.0% |
| 1rtqA00 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.52 | 44.0 | 3.26e-01 | 98.0% | 79.4% |
| 4bxiA00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.52 | 35.0 | 3.14e-01 | 70.7% | 65.1% |
| 2ln3A00 | 3.30.110.140 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › | 0.51 | 36.0 | 3.93e-01 | 74.7% | 88.0% |
| 5x7fA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 33.0 | 2.72e-01 | 72.7% | 33.3% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4971049 | 101.1.2.55 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB | 0.66 | 43.0 | 4.71e-01 | 79.8% | 82.5% |
| 5059035 | 101.1.2.892 ↗ | alpha arrays › HTH › HTH › winged helix domain › ArsR | 0.65 | 44.0 | 4.61e-01 | 79.8% | 76.7% |
| 4994983 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 45.0 | 5.05e-01 | 82.8% | 100.0% |
| 5000176 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.65 | 57.0 | 3.98e-01 | 100.0% | 72.1% |
| 5010592 | 101.1.2.68 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 | 0.62 | 42.0 | 4.00e-01 | 71.7% | 58.3% |
| 3739985 | 101.1.2.98 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1 | 0.61 | 53.0 | 4.66e-01 | 100.0% | 74.8% |
| 5082051 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 44.0 | 4.63e-01 | 76.8% | 84.4% |
| 5026584 | 101.1.2.55 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB | 0.61 | 42.0 | 4.31e-01 | 79.8% | 74.7% |
| 4970751 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 40.0 | 4.42e-01 | 78.8% | 90.7% |
| 3282173 | 2004.1.1.689 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15, AAA_21 | 0.59 | 53.0 | 3.59e-01 | 100.0% | 80.3% |
| 3414623 | 101.1.2.566 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1, CDT1_C | 0.59 | 51.0 | 3.77e-01 | 100.0% | 53.6% |
| 3946399 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 46.0 | 4.23e-01 | 84.8% | 66.9% |
| 3907776 | 3736.1.1.0 ↗ | alpha superhelices › NLRC4 helical domain HD2 › NLRC4 helical domain HD2 › NLRC4 helical domain HD2 | 0.58 | 44.0 | 3.68e-01 | 81.8% | 76.7% |
| 3356481 | 386.1.1.117 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 | 0.58 | 42.0 | 4.56e-01 | 76.8% | 100.0% |
| 4357374 | 320.2.1.1 ↗ | a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain › Ribosomal_S8 | 0.58 | 36.0 | 4.26e-01 | 71.7% | 96.9% |
| 5075002 | 101.1.2.525 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7646 | 0.57 | 41.0 | 4.20e-01 | 76.8% | 78.9% |
| 4976066 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 40.0 | 4.32e-01 | 73.7% | 100.0% |
| 3928777 | 101.1.2.154 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1_C | 0.56 | 46.0 | 4.51e-01 | 90.9% | 85.5% |
| 4017553 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.56 | 44.0 | 4.49e-01 | 83.8% | 94.7% |
| 3319155 | 101.1.4.12 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MSC | 0.55 | 42.0 | 3.07e-01 | 80.8% | 34.6% |
| 4953964 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.55 | 42.0 | 4.15e-01 | 83.8% | 93.6% |
| 4553370 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.55 | 43.0 | 4.14e-01 | 84.8% | 76.5% |
| 4583415 | 320.2.1.1 ↗ | a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain › Ribosomal_S8 | 0.55 | 38.0 | 4.22e-01 | 71.7% | 93.3% |
| 3743748 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 43.0 | 4.52e-01 | 83.8% | 96.7% |
| 3744259 | 101.1.2.154 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1_C | 0.54 | 45.0 | 4.19e-01 | 94.9% | 77.7% |
| 3974812 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 46.0 | 3.28e-01 | 100.0% | 77.2% |
| 4477560 | 328.6.1.1 ↗ | a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › EPSP_synthase | 0.53 | 47.0 | 3.72e-01 | 100.0% | 100.0% |
| None | — | 0.51 | 44.0 | 3.19e-01 | 100.0% | 75.2% | |
| 4010324 | 225.1.1.3 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c | 0.51 | 35.0 | 3.13e-01 | 71.7% | 62.2% |
| 3788795 | 320.5.1.0 ↗ | a+b two layers › R3H domain-like | 0.51 | 40.0 | 3.94e-01 | 84.8% | 100.0% |
| 5055279 | 1075.1.2.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain | 0.51 | 32.0 | 2.58e-01 | 100.0% | 30.7% |
| 4999520 | 2008.1.1.44 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › FokI_cleav_dom | 0.50 | 38.0 | 3.29e-01 | 82.8% | 80.0% |
D2
high
residues 166-271
Domain cluster:
rep: aot2015-SM02_SRR1761699_Peru_trim_clean_trim_clean_scaffold_10_curated_closed_complete_start-adj_prodigal-single.1__X__X__00350__D7-108
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6s2wA01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.61 | 39.0 | 4.34e-01 | 75.5% | 82.9% |
| 1t6aA02 | 3.30.310.120 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein | 0.55 | 36.0 | 4.14e-01 | 94.3% | 92.3% |
| 1tzlA02 | 3.30.1920.50 | Alpha Beta › 2-Layer Sandwich › Phage tail proteins - 2 layer sandwich fold › | 0.55 | 26.0 | 3.28e-01 | 86.8% | 75.8% |
| 5mu3B00 | 3.40.50.12050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 34.0 | 2.97e-01 | 75.5% | 40.5% |
| 3fdfA02 | 6.10.140.550 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 27.0 | 3.51e-01 | 93.4% | 92.9% |
| 2qsdA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 29.0 | 3.45e-01 | 75.5% | 86.6% |
| 2xzmG00 | 1.10.455.10 | Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 | 0.51 | 38.0 | 3.17e-01 | 79.2% | 90.1% |
| 3s0xA01 | 1.20.120.1220 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.51 | 37.0 | 3.39e-01 | 78.3% | 93.9% |
| 3bkhA01 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.50 | 30.0 | 3.28e-01 | 100.0% | 72.1% |
| 7aj9A01 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.50 | 28.0 | 3.33e-01 | 79.2% | 85.1% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4081660 | 109.4.1.1457 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27772 | 0.54 | 41.0 | 3.05e-01 | 79.2% | 47.3% |
| 6353 | 331.11.1.1 ↗ | a+b two layers › TBP-like › Rbstp2229 protein › Rbstp2229 protein › DUF1885 | 0.52 | 37.0 | 3.55e-01 | 95.3% | 62.9% |
| 3553091 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 39.0 | 3.27e-01 | 84.9% | 72.0% |
| 3638091 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 44.0 | 3.13e-01 | 97.2% | 33.9% |