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ON453899.1__WAK79373.1__X__00085

Bact-Vir

ON453899.1__WAK79373.1__X__00085

Identity

Accession:
ON453899 ↗
Kingdom:
phage

Quality

82.6 mean pLDDT

Taxonomy

TaxID: 2951971

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 51-124
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bz0A00 3.40.50.10990 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTP cyclohydrolase II 0.69 52.0 4.06e-01 82.4% 80.4%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.69 49.0 3.99e-01 75.7% 100.0%
1w1wA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 48.0 3.23e-01 77.0% 42.7%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.65 55.0 4.38e-01 91.9% 69.2%
1u17A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 47.0 3.51e-01 77.0% 85.4%
4i8oA02 3.30.160.690 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain 0.64 53.0 5.02e-01 93.2% 80.0%
3qkgA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 54.0 4.14e-01 91.9% 89.0%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.64 48.0 3.74e-01 82.4% 88.6%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.63 53.0 4.87e-01 97.3% 73.5%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.63 51.0 4.91e-01 93.2% 85.4%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.61 41.0 2.69e-01 70.3% 33.2%
5o16B00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.61 48.0 3.30e-01 86.5% 83.1%
3apuB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 49.0 3.68e-01 86.5% 87.8%
1mpgA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.60 53.0 4.63e-01 100.0% 82.1%
3kxyJ00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.59 48.0 4.06e-01 90.5% 79.1%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 44.0 3.05e-01 83.8% 41.2%
1cb8A03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.58 40.0 3.47e-01 70.3% 57.3%
3rlfF03 2.40.430.10 Mainly Beta › Beta Barrel › Periplasmic binding protein-like II › D-maltodextrin-binding protein, MBP 0.58 43.0 4.09e-01 79.7% 89.8%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.58 48.0 3.80e-01 91.9% 66.0%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 48.0 4.06e-01 98.6% 83.0%
4dy0B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.57 40.0 3.39e-01 74.3% 45.3%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 45.0 3.66e-01 86.5% 79.3%
4h5iB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 48.0 3.15e-01 95.9% 69.0%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.55 45.0 4.08e-01 91.9% 75.2%
1e2rA02 2.140.10.20 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 0.55 44.0 2.81e-01 90.5% 88.4%
5c2vB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 47.0 3.08e-01 97.3% 73.6%
6eugA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 47.0 3.06e-01 98.6% 68.3%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.54 47.0 4.15e-01 98.6% 93.0%
7xr9E01 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 45.0 3.36e-01 93.2% 62.4%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 45.0 3.15e-01 95.9% 88.5%
2ecfA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.54 42.0 2.69e-01 87.8% 35.0%
2cn2A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 46.0 2.95e-01 98.6% 39.1%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 46.0 3.03e-01 98.6% 57.3%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.53 36.0 3.57e-01 70.3% 76.2%
3loyA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 36.0 3.31e-01 70.3% 84.2%
2vt8A00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.52 44.0 3.68e-01 100.0% 64.3%
1xfdA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.52 41.0 2.58e-01 87.8% 35.6%
4irzA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.52 45.0 2.84e-01 100.0% 87.3%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 44.0 3.19e-01 100.0% 92.1%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.51 43.0 3.55e-01 94.6% 67.6%
1srqA01 3.30.1120.160 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.51 43.0 3.64e-01 100.0% 81.9%
4g2sA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.50 42.0 3.84e-01 98.6% 97.2%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5052406 868.1.1.1 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.72 58.0 4.35e-01 87.8% 90.6%
3663339 331.4.1.7 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › DUF1499 0.70 60.0 4.78e-01 97.3% 54.2%
None 0.67 57.0 3.46e-01 93.2% 18.4%
3265052 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.66 48.0 3.34e-01 77.0% 42.1%
3513651 331.9.1.8 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP3B1_C_2 0.66 55.0 4.83e-01 93.2% 63.6%
3984944 213.2.1.0 a+b three layers › Nat/Ivy › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme, Ivy 0.65 54.0 5.21e-01 91.9% 85.9%
3391086 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.65 55.0 3.33e-01 93.2% 20.6%
3184125 223.3.1.0 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins 0.65 44.0 3.73e-01 70.3% 51.7%
3630854 216.1.1.2 a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.65 53.0 3.94e-01 91.9% 82.8%
3176073 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.64 48.0 4.93e-01 83.8% 85.5%
3687983 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.63 51.0 4.23e-01 91.9% 65.7%
3265334 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.63 53.0 4.68e-01 94.6% 80.0%
4939670 5.1.3.20 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PD40 0.62 49.0 3.29e-01 86.5% 78.0%
3933073 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.62 51.0 3.81e-01 90.5% 54.7%
3870867 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.62 52.0 4.55e-01 97.3% 63.3%
5072279 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.62 48.0 3.08e-01 85.1% 31.5%
3425789 5.1.3.68 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.62 44.0 2.95e-01 77.0% 50.3%
1153941 243.4.1.2 a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like › DsbG_N 0.61 44.0 4.10e-01 77.0% 78.1%
3632911 243.3.1.49 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Saf4_Yju2 0.61 44.0 4.22e-01 77.0% 91.8%
3719460 101.1.12.0 alpha arrays › HTH › HTH › HTH motif inserted in other structures 0.60 48.0 3.90e-01 83.8% 83.8%
3264545 5.1.3.117 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.60 41.0 2.64e-01 70.3% 41.2%
3378508 5.1.4.231 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FBA_3 0.60 41.0 2.75e-01 70.3% 34.4%
4172303 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.60 36.0 3.01e-01 91.9% 35.2%
3388799 868.1.1.1 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.60 46.0 3.53e-01 85.1% 76.8%
3256023 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.59 53.0 4.26e-01 95.9% 87.4%
4028705 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.59 50.0 4.27e-01 93.2% 70.8%
3536447 4026.1.1.1 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › Rap-GAP_dimer 0.59 52.0 4.13e-01 95.9% 82.1%
4028913 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 45.0 2.92e-01 85.1% 73.0%
3402381 4099.1.1.10 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 0.59 50.0 3.85e-01 94.6% 80.0%
4363805 292.2.1.9 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Polo_box_4 0.59 47.0 4.53e-01 93.2% 100.0%
147045 3257.1.1.1 a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.59 50.0 3.70e-01 91.9% 53.3%
3743299 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.59 50.0 4.33e-01 91.9% 82.7%
4024970 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.58 46.0 2.87e-01 86.5% 27.4%
4950203 331.4.1.35 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › PF27341 0.58 47.0 3.42e-01 93.2% 30.2%
3376441 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.58 44.0 2.90e-01 82.4% 37.2%
4045276 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.57 44.0 2.88e-01 85.1% 22.2%
4658924 2004.1.1.433 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.57 44.0 2.88e-01 85.1% 22.3%
3496419 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 48.0 2.73e-01 95.9% 15.3%
3915050 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.56 45.0 2.98e-01 89.2% 27.1%
3919645 5.1.4.13 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP 0.56 46.0 2.90e-01 91.9% 53.5%
3474747 5.1.5.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.56 43.0 2.67e-01 83.8% 43.2%
3257390 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 45.0 2.96e-01 86.5% 49.4%
3219739 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 48.0 3.18e-01 100.0% 89.4%
3699727 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 46.0 2.99e-01 93.2% 88.6%
3176357 5.1.5.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.55 42.0 2.67e-01 85.1% 42.2%
3479225 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.55 46.0 4.15e-01 91.9% 87.0%
4059006 9.9.1.0 beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB 0.55 45.0 3.88e-01 93.2% 96.8%
3630390 5.1.4.271 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 0.54 48.0 3.10e-01 100.0% 96.1%
3267720 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.54 43.0 4.13e-01 90.5% 86.7%
3873021 5.1.5.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.54 42.0 2.60e-01 85.1% 39.6%
3484523 5.1.5.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.54 42.0 2.83e-01 86.5% 82.9%
3259314 9.2.1.0 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.54 46.0 4.19e-01 97.3% 89.0%
3610987 719.1.1.0 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.54 44.0 3.74e-01 91.9% 91.2%
2321284 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 44.0 3.82e-01 90.5% 94.7%
3397645 5.1.4.85 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › NOL11_N 0.54 45.0 3.01e-01 94.6% 94.7%
4014670 11.8.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like 0.53 46.0 3.73e-01 100.0% 96.7%
3592578 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 45.0 2.89e-01 95.9% 30.9%
3940325 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 45.0 3.12e-01 98.6% 86.1%
4017244 3385.1.1.2 beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 › PF27986 0.53 43.0 3.71e-01 94.6% 83.2%
4016853 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 44.0 3.46e-01 100.0% 68.4%
4030625 219.1.1.97 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase 0.52 44.0 3.16e-01 95.9% 43.9%
3338126 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.52 43.0 3.00e-01 93.2% 92.5%
3171838 5.1.5.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.52 44.0 2.71e-01 97.3% 17.5%
3737835 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.51 42.0 3.86e-01 93.2% 80.0%
1145731 708.1.1.5 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › AFT 0.51 41.0 3.49e-01 87.8% 72.7%
4027822 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 40.0 2.90e-01 85.1% 91.9%
3529982 5.1.4.156 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Ge1_WD40 0.51 42.0 2.63e-01 93.2% 41.3%
3484139 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.50 43.0 3.72e-01 100.0% 87.2%
3675472 5.1.5.45 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PROPPIN 0.50 41.0 2.99e-01 94.6% 58.7%