←Back to structures

ON453899.1__WAK79386.1__X__00098

Bact-Vir

ON453899.1__WAK79386.1__X__00098

Identity

Accession:
ON453899 ↗
Kingdom:
phage

Quality

82.2 mean pLDDT

Taxonomy

Clostridium_phage_Amboise

TaxID: 2951971

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 41-143
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ihpB05 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.74 39.0 5.14e-01 78.6% 98.1%
2knaA01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.69 37.0 4.87e-01 71.8% 100.0%
1wgnA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.69 36.0 4.38e-01 76.7% 81.0%
1wleA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.66 33.0 3.25e-01 95.1% 44.7%
3nbiA01 1.10.8.1020 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain 0.64 37.0 4.59e-01 72.8% 100.0%
2qbyA01 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.63 49.0 5.00e-01 91.3% 84.5%
1w5sA01 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 44.0 4.67e-01 78.6% 88.6%
1ng6A01 1.10.1510.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Protein Yqey; Chain: A; domain1 › Uncharacterised protein YqeY/AIM41, N-terminal domain 0.58 38.0 4.03e-01 94.2% 74.7%
2ly8A00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.57 42.0 4.01e-01 77.7% 85.1%
1gakA00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.56 39.0 3.55e-01 70.9% 68.6%
1f45B00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.54 33.0 3.07e-01 81.6% 47.4%
7eebI01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 36.0 3.04e-01 80.6% 40.8%
3solA00 1.20.58.1630 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS 0.54 38.0 4.00e-01 72.8% 100.0%
1t3dA01 1.10.3130.10 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 0.54 38.0 3.53e-01 75.7% 87.9%
4akfA01 3.40.1090.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytosolic phospholipase A2 catalytic domain › Cytosolic phospholipase A2 catalytic domain 0.53 45.0 3.22e-01 97.1% 48.0%
4ae4A00 1.20.120.1920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UBAP1 SOUBA domain 0.53 42.0 4.08e-01 85.4% 81.6%
2lm4A01 1.10.150.250 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Flavinator of succinate dehydrogenase 0.52 36.0 3.84e-01 72.8% 85.9%
1kwgA02 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.52 40.0 3.27e-01 82.5% 97.5%
2ze7A02 1.10.287.890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.51 38.0 3.84e-01 100.0% 78.4%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3716814 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.74 36.0 5.05e-01 72.8% 98.0%
3865590 103.1.1.24 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › BIRC2-3-like_UBA 0.72 40.0 4.89e-01 73.8% 86.2%
4939455 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.72 41.0 5.16e-01 70.9% 96.7%
4665959 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.70 41.0 5.10e-01 76.7% 98.3%
3254417 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.69 46.0 5.28e-01 79.6% 93.3%
4248743 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.68 40.0 4.65e-01 72.8% 84.3%
4053752 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.68 36.0 4.51e-01 70.9% 88.3%
3226552 148.1.3.5 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Pol_alpha_B_N 0.67 45.0 5.32e-01 73.8% 100.0%
3554590 148.1.3.5 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Pol_alpha_B_N 0.64 45.0 5.04e-01 80.6% 93.8%
3988210 4230.1.1.3 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 0.64 50.0 5.19e-01 83.5% 90.5%
3456399 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 47.0 4.21e-01 83.5% 54.7%
4576669 148.1.3.49 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Hda_lid 0.61 42.0 4.61e-01 78.6% 90.0%
5023792 148.1.3.19 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.61 44.0 4.40e-01 77.7% 99.1%
4516639 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.59 36.0 4.36e-01 75.7% 100.0%
4454488 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 44.0 4.77e-01 90.3% 96.5%
4932398 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.58 36.0 3.88e-01 70.9% 74.1%
4979868 5076.2.1.13 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › DUF7847 0.57 46.0 3.44e-01 85.4% 44.7%
3120 163.1.1.1 ↗ alpha arrays › Fertilization protein › Fertilization protein › Fertilization protein › Egg_lysin 0.56 39.0 3.55e-01 70.9% 68.6%
4999524 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.56 41.0 4.57e-01 78.6% 100.0%
5044337 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.56 39.0 4.07e-01 74.8% 77.9%
4957062 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.56 41.0 4.33e-01 79.6% 88.9%
4110549 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.56 32.0 3.20e-01 95.1% 53.6%
3934842 108.1.1.97 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.55 30.0 3.33e-01 71.8% 65.0%
4976900 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.55 44.0 4.61e-01 89.3% 98.9%
3905694 108.1.1.25 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_4 0.54 37.0 3.69e-01 80.6% 67.6%
4988855 3754.1.1.1 ↗ alpha bundles › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Glycos_transf_4 0.54 43.0 3.15e-01 89.3% 83.4%
3602497 2007.1.2.13 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_6 0.54 44.0 3.44e-01 89.3% 80.4%
4269573 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.54 42.0 4.33e-01 87.4% 92.6%
4669231 5050.1.1.3 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › LacY_symp 0.50 41.0 3.32e-01 89.3% 83.5%