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ON453899.1__WAK79402.1__X__00114

Bact-Vir

ON453899.1__WAK79402.1__X__00114

Identity

Accession:
ON453899 ↗
Kingdom:
phage

Quality

82.1 mean pLDDT

Taxonomy

Clostridium_phage_Amboise

TaxID: 2951971

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-69
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.86 69.0 7.18e-01 100.0% 93.0%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.81 62.0 5.72e-01 100.0% 64.9%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.79 58.0 5.95e-01 98.4% 81.7%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 66.0 6.18e-01 100.0% 78.7%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 67.0 6.72e-01 100.0% 95.3%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 57.0 5.70e-01 100.0% 79.4%
2rqtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 65.0 6.64e-01 100.0% 98.4%
3pieB05 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 58.0 5.82e-01 96.8% 84.4%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 62.0 6.23e-01 100.0% 92.1%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 60.0 6.19e-01 100.0% 98.3%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 60.0 6.23e-01 98.4% 100.0%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 58.0 5.95e-01 100.0% 93.3%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 50.0 5.54e-01 100.0% 100.0%
2eyzA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 47.0 4.16e-01 85.5% 54.9%
1ljoA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 52.0 4.97e-01 98.4% 80.0%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 50.0 4.92e-01 100.0% 85.3%
1t0hA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 50.0 4.38e-01 91.9% 65.6%
1b34B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 50.0 4.79e-01 100.0% 78.4%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 51.0 4.90e-01 100.0% 82.2%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 50.0 5.02e-01 100.0% 92.3%
4emhA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 51.0 5.23e-01 100.0% 100.0%
6asoH00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 47.0 4.38e-01 95.2% 66.3%
5mkiH00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 48.0 4.68e-01 100.0% 83.1%
4c92F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 49.0 4.69e-01 100.0% 83.1%
6cnhA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 39.0 3.70e-01 90.3% 55.0%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 49.0 4.71e-01 100.0% 82.7%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 40.0 4.14e-01 83.9% 82.1%
4c92C00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 48.0 4.57e-01 100.0% 87.3%
2crfA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 45.0 3.70e-01 91.9% 84.0%
1y5oA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 43.0 3.68e-01 91.9% 82.6%
3hi2B00 3.30.2310.40 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › 0.54 42.0 3.76e-01 91.9% 89.7%
4fh3A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.53 39.0 3.20e-01 80.6% 71.2%
2l2fA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.53 42.0 3.61e-01 91.9% 87.0%
1ne3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 37.0 3.67e-01 80.6% 72.1%
6cz7A01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.52 37.0 3.79e-01 90.3% 80.6%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 42.0 3.21e-01 100.0% 41.0%
1mkeA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 44.0 3.41e-01 100.0% 55.6%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.50 40.0 3.71e-01 91.9% 70.7%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3699652 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 63.0 6.23e-01 100.0% 81.5%
3782313 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.78 70.0 6.60e-01 100.0% 84.0%
3939408 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 67.0 6.62e-01 100.0% 90.8%
3816553 4.1.1.306 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.76 51.0 5.36e-01 93.5% 78.2%
3275623 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.76 65.0 5.80e-01 100.0% 68.2%
3566631 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 67.0 6.12e-01 100.0% 76.2%
3936225 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 64.0 6.18e-01 100.0% 84.3%
3482680 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 66.0 6.54e-01 100.0% 93.8%
4218488 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.74 66.0 6.04e-01 100.0% 76.2%
3290564 4.1.1.292 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Rv2311 0.74 68.0 5.93e-01 100.0% 74.4%
3790978 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 62.0 5.94e-01 96.8% 81.4%
3623785 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.73 65.0 6.09e-01 100.0% 81.3%
3787441 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 65.0 5.71e-01 100.0% 67.8%
3629145 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.73 63.0 6.24e-01 100.0% 90.8%
3368700 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 66.0 5.37e-01 100.0% 60.0%
3216974 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.69 63.0 5.73e-01 98.4% 93.8%
3970000 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 62.0 5.27e-01 100.0% 66.0%
3624228 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 60.0 5.70e-01 98.4% 96.0%
3815495 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 57.0 5.49e-01 100.0% 82.9%
3617175 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 47.0 5.00e-01 100.0% 89.1%
3594811 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 56.0 5.57e-01 96.8% 98.5%
4028659 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 56.0 5.17e-01 100.0% 81.2%
3441677 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 46.0 5.08e-01 95.2% 98.0%
4000403 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.62 42.0 4.50e-01 98.4% 90.0%
5080207 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 42.0 3.02e-01 72.6% 80.0%
3291271 331.3.1.9 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.61 52.0 3.88e-01 91.9% 66.2%
3830083 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.59 50.0 3.99e-01 100.0% 85.2%
3291157 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.58 48.0 3.70e-01 100.0% 40.7%
3254408 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 45.0 4.48e-01 98.4% 86.2%
5049591 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 47.0 4.68e-01 95.2% 95.4%
3619246 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 40.0 3.44e-01 79.0% 63.8%
4546527 236.1.1.0 ↗ beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain 0.53 45.0 3.69e-01 98.4% 87.2%
3670468 4.1.1.332 ↗ beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 0.52 43.0 3.55e-01 100.0% 60.0%
3861569 220.1.1.56 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ASK_PH 0.52 45.0 3.73e-01 100.0% 70.4%
3505247 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 39.0 3.52e-01 83.9% 66.7%
3339798 2004.1.1.162 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.52 37.0 2.56e-01 77.4% 94.7%
4943301 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 31.0 3.38e-01 90.3% 72.0%
4882410 568.1.1.25 ↗ few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related › NDUFA12 0.52 41.0 3.47e-01 90.3% 66.4%
D2 medium residues 75-150
PDB
Domain cluster: rep: IMGVR_UViG_3300013099_000017-3300013099-Ga0164315_10000001215__D59-117
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xksA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 49.0 3.26e-01 100.0% 51.3%
3rcyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 40.0 3.39e-01 72.4% 56.7%
1h2iA01 3.30.390.80 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 0.57 50.0 4.05e-01 97.4% 64.2%
4jn7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 38.0 3.41e-01 71.1% 60.5%
3bjsA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 37.0 3.33e-01 71.1% 74.4%
3bh1A03 3.40.140.40 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain 0.55 42.0 3.45e-01 82.9% 52.1%
2wyhB06 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.53 40.0 2.77e-01 81.6% 89.8%
6g6qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 3.43e-01 92.1% 93.1%
4okeA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 35.0 2.83e-01 72.4% 76.2%
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 41.0 2.94e-01 97.4% 76.1%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5050909 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 48.0 3.97e-01 76.3% 62.3%
4019781 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 47.0 3.35e-01 100.0% 63.1%
4398495 109.21.1.8 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 0.54 45.0 2.68e-01 100.0% 38.2%
4280539 109.21.1.8 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 0.53 44.0 2.64e-01 100.0% 35.9%
4014861 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 44.0 3.20e-01 98.7% 64.1%