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ON453899.1__WAK79424.1__X__00136

Bact-Vir

ON453899.1__WAK79424.1__X__00136

Identity

Accession:
ON453899 ↗
Kingdom:
phage

Quality

78.1 mean pLDDT

Taxonomy

TaxID: 2951971

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-68
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.74 58.0 5.57e-01 85.9% 74.3%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.72 49.0 3.70e-01 71.9% 77.2%
6nhsA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.67 58.0 3.94e-01 98.4% 83.3%
3ijtB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 40.0 3.19e-01 70.3% 33.6%
1z94B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 43.0 3.42e-01 79.7% 97.9%
2gfgA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.58 50.0 3.61e-01 98.4% 85.9%
3o6qA02 3.30.70.2720 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 50.0 4.22e-01 100.0% 57.0%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.58 40.0 3.59e-01 71.9% 57.3%
1et9A01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.58 39.0 3.32e-01 70.3% 98.2%
4egwA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.57 39.0 3.19e-01 75.0% 35.1%
1v9kA00 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.57 45.0 3.23e-01 92.2% 66.5%
2fm8B00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.57 48.0 3.99e-01 100.0% 84.0%
2wb8A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 39.0 2.93e-01 71.9% 75.2%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 44.0 3.56e-01 85.9% 70.7%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 39.0 3.73e-01 81.2% 62.8%
7wa9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 38.0 2.98e-01 71.9% 32.6%
2hzrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 38.0 2.94e-01 75.0% 53.4%
3h7jA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 37.0 3.12e-01 71.9% 85.5%
3t4nA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.54 36.0 3.27e-01 71.9% 52.1%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.54 39.0 3.64e-01 81.2% 61.3%
1snzB00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 44.0 2.82e-01 93.8% 90.6%
2bbhA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.53 38.0 2.93e-01 76.6% 33.1%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.53 44.0 3.52e-01 100.0% 52.1%
1upsA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 40.0 3.15e-01 82.8% 53.4%
1su0B00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.52 42.0 3.43e-01 95.3% 95.6%
1js3A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 43.0 3.85e-01 98.4% 97.9%
1g3pA02 3.90.450.1 Alpha Beta › Alpha-Beta Complex › Minor Coat Protein; domain 2 › Minor Coat Protein; Domain 2 0.51 32.0 2.77e-01 73.4% 39.4%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 41.0 3.10e-01 90.6% 41.7%
1fyhB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 3.83e-01 98.4% 67.0%
2m89A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 44.0 3.50e-01 100.0% 96.3%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 38.0 3.28e-01 85.9% 85.2%
2anrA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.51 44.0 4.22e-01 98.4% 97.3%
3md7A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.50 38.0 2.60e-01 85.9% 28.1%
2vg9A00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.50 36.0 2.54e-01 78.1% 35.5%
4ckbD03 2.40.50.830 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 40.0 3.36e-01 98.4% 76.9%
1mmuA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.50 41.0 2.71e-01 96.9% 93.8%
2v1yA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.50 34.0 3.13e-01 76.6% 51.7%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5032255 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 57.0 5.61e-01 90.6% 100.0%
3466381 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.70 59.0 4.84e-01 90.6% 80.9%
3608102 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.70 55.0 5.38e-01 85.9% 95.7%
3709350 304.31.1.0 a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase 0.69 50.0 3.58e-01 76.6% 47.2%
3701914 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.68 62.0 5.35e-01 98.4% 96.8%
3371527 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.68 53.0 4.31e-01 85.9% 58.9%
4999755 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 61.0 4.67e-01 100.0% 62.5%
5001733 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.67 55.0 4.22e-01 90.6% 46.9%
3784046 59.1.2.1 beta complex topology › triple barrel › triple barrel › RNase H2 subunits B and C › RNase_H2_suC 0.66 56.0 4.53e-01 100.0% 69.6%
3514322 223.2.1.37 a+b three layers › Profilin-like › profilin-like › profilin-like › C9orf72-like 0.62 48.0 3.64e-01 85.9% 43.0%
5004462 3454.1.1.0 beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like 0.62 44.0 4.00e-01 82.8% 54.4%
4524129 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.62 51.0 4.57e-01 95.3% 96.8%
3808055 244.1.1.29 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › AAA_assoc 0.61 42.0 3.47e-01 71.9% 56.7%
None 0.61 42.0 2.69e-01 71.9% 21.0%
5007359 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.61 45.0 4.47e-01 85.9% 75.7%
4949667 296.1.1.1 a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › NIR_SIR 0.60 53.0 4.11e-01 100.0% 66.9%
5007104 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.60 39.0 3.34e-01 98.4% 41.0%
4960926 221.10.1.1 a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ 0.60 38.0 3.94e-01 70.3% 68.3%
5053632 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 45.0 3.73e-01 85.9% 45.6%
4928046 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 42.0 3.52e-01 79.7% 41.7%
4949986 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.58 39.0 3.32e-01 100.0% 40.9%
3211693 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.58 40.0 2.72e-01 73.4% 20.0%
3941583 331.3.1.26 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF2867 0.58 39.0 3.04e-01 70.3% 50.0%
3683603 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 43.0 2.60e-01 82.8% 11.9%
5005723 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.57 40.0 2.68e-01 75.0% 42.1%
5000180 7504.1.1.2 a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › NTPase_I-T 0.57 49.0 3.67e-01 100.0% 80.0%
3821077 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 44.0 2.72e-01 84.4% 15.2%
3929985 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 42.0 3.71e-01 82.8% 74.0%
3834577 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 43.0 3.53e-01 85.9% 85.4%
3376563 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.56 47.0 3.67e-01 96.9% 65.3%
2607438 375.13.1.1 few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt 0.55 43.0 4.18e-01 87.5% 86.7%
3321360 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.55 43.0 4.11e-01 85.9% 85.3%
3492201 295.1.1.1 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 0.55 40.0 3.82e-01 79.7% 66.7%
4295277 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 38.0 2.91e-01 100.0% 31.3%
5050916 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.55 37.0 2.93e-01 71.9% 94.7%
5053329 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 45.0 3.82e-01 100.0% 67.5%
3486946 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.54 39.0 2.85e-01 79.7% 95.6%
4964696 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.54 40.0 3.29e-01 84.4% 43.5%
5009292 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.54 36.0 2.44e-01 73.4% 18.3%
4998473 221.10.1.1 a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ 0.54 39.0 3.64e-01 79.7% 74.1%
3579622 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.54 45.0 3.83e-01 95.3% 69.1%
4988451 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 46.0 3.86e-01 100.0% 59.1%
5078190 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.54 43.0 2.96e-01 93.8% 24.5%
5033737 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.54 41.0 3.02e-01 84.4% 83.0%
5075317 221.10.1.0 a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain 0.53 36.0 3.59e-01 70.3% 96.9%
5020150 221.10.1.1 a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ 0.53 39.0 3.59e-01 79.7% 70.6%
3433086 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.53 41.0 3.59e-01 82.8% 98.9%
4116893 7504.1.1.2 a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › NTPase_I-T 0.52 43.0 3.35e-01 100.0% 75.3%
3959466 243.3.1.29 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF4333 0.52 36.0 3.43e-01 71.9% 66.7%
377116 206.1.1.28 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Haspin_kinase 0.52 43.0 2.73e-01 93.8% 61.8%
3248029 223.7.1.1 a+b three layers › Profilin-like › FLJ32549 C-terminal domain-like › FLJ32549 C-terminal domain-like › C12orf66_like 0.52 43.0 3.48e-01 100.0% 51.7%
3198094 295.1.1.1 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 0.52 37.0 3.52e-01 81.2% 61.3%
3271570 223.2.1.22 a+b three layers › Profilin-like › profilin-like › profilin-like › Folliculin 0.52 44.0 3.33e-01 100.0% 49.7%
3606232 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.51 39.0 3.47e-01 85.9% 77.7%
3663084 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.51 41.0 3.14e-01 85.9% 84.1%
4974776 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.51 42.0 3.43e-01 100.0% 51.7%
3743107 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.51 35.0 2.81e-01 71.9% 92.1%
4930437 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.51 38.0 3.24e-01 85.9% 48.6%
4522783 101.1.2.715 alpha arrays › HTH › HTH › winged helix domain › CheF-arch 0.51 38.0 2.55e-01 85.9% 18.2%
3215014 632.22.1.184 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › SMC_N 0.51 38.0 2.31e-01 84.4% 25.0%
3303919 59.1.1.16 beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › PF30948 0.50 34.0 3.06e-01 71.9% 60.0%
3239667 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.50 39.0 2.25e-01 89.1% 67.8%
D2 high residues 80-189
PDB
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kj9A00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.88 70.0 6.88e-01 100.0% 78.0%
3nrwA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.87 73.0 7.52e-01 100.0% 92.3%
1z19A01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.85 68.0 7.18e-01 100.0% 93.0%
2kiwA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.76 56.0 6.28e-01 93.6% 98.8%
3fxdC00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.68 28.0 4.13e-01 91.8% 86.0%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.64 31.0 4.11e-01 97.3% 87.7%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.61 51.0 4.58e-01 90.9% 82.5%
3n4eA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 51.0 5.21e-01 94.5% 97.1%
2jaqA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 45.0 3.73e-01 78.2% 50.3%
1gcvB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 47.0 4.40e-01 84.5% 100.0%
3nz4B03 1.10.274.20 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 0.59 45.0 4.67e-01 92.7% 85.6%
6o0aA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 46.0 4.15e-01 84.5% 96.0%
2imsA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.57 49.0 4.28e-01 92.7% 71.2%
2lseA00 1.20.120.1360 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.56 41.0 4.29e-01 100.0% 86.1%
2ig3A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 44.0 4.26e-01 100.0% 75.6%
1kn1B00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.55 49.0 4.35e-01 100.0% 68.9%
3dynA00 1.10.1300.10 Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain 0.55 48.0 3.48e-01 98.2% 62.2%
1dlwA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 39.0 3.91e-01 74.5% 100.0%
2gkmA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 41.0 3.90e-01 77.3% 93.7%
3c8tA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.54 35.0 3.74e-01 87.3% 74.2%
2hszA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 35.0 4.05e-01 92.7% 94.7%
1wkbA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.54 41.0 4.06e-01 80.9% 74.4%
1tu9A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 44.0 4.23e-01 100.0% 76.3%
3aqtA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 41.0 3.44e-01 81.8% 51.8%
3jsbA01 1.20.1440.300 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain 0.53 37.0 4.12e-01 94.5% 98.8%
3vkgB03 1.20.58.1120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 0.53 41.0 3.66e-01 100.0% 58.3%
1gcvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 43.0 4.06e-01 100.0% 76.4%
6tkyA03 1.20.58.740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C 0.51 42.0 4.12e-01 100.0% 81.1%
2w96A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 36.0 3.59e-01 100.0% 71.7%
3ubcA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 41.0 3.94e-01 100.0% 75.6%
4f91B04 1.10.3380.10 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain 0.51 44.0 4.04e-01 95.5% 91.5%
3f7cA00 1.20.1590.10 Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like 0.50 42.0 3.47e-01 90.9% 76.4%
3k3uA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.50 43.0 4.09e-01 100.0% 83.9%
2d05A02 1.20.141.10 Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 0.50 37.0 3.76e-01 90.9% 79.3%
1w98B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.50 36.0 3.57e-01 73.6% 89.5%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4681794 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.79 67.0 6.55e-01 99.1% 82.5%
4954763 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.78 59.0 6.38e-01 98.2% 96.7%
4997939 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.77 57.0 6.22e-01 99.1% 95.6%
5020383 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.76 71.0 6.72e-01 100.0% 93.8%
4044410 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.76 67.0 6.67e-01 100.0% 90.4%
3183576 3985.1.1.1 alpha bundles › CFEM domain (contains eight cysteines) › CFEM domain (contains eight cysteines) › CFEM domain (contains eight cysteines) › CFEM 0.69 48.0 5.54e-01 86.4% 98.8%
3287102 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 35.0 3.93e-01 90.9% 68.2%
3911818 3832.1.1.1 alpha bundles › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › DUF758 0.61 51.0 4.48e-01 90.9% 77.0%
3407816 3832.1.1.1 alpha bundles › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › DUF758 0.61 51.0 4.49e-01 90.9% 77.9%
3500773 3832.1.1.1 alpha bundles › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › DUF758 0.60 51.0 4.36e-01 91.8% 70.9%
4397294 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.59 46.0 4.24e-01 99.1% 63.4%
3266269 109.4.1.70 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID 0.59 39.0 3.24e-01 76.4% 36.6%
3936862 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 39.0 3.34e-01 76.4% 41.1%
1407186 3832.1.1.1 alpha bundles › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › DUF758 0.58 48.0 4.09e-01 90.9% 68.8%
4011174 5041.1.1.0 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.57 39.0 4.05e-01 97.3% 73.3%
3755341 133.1.1.1 alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.57 44.0 3.64e-01 84.5% 84.3%
3673218 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 37.0 3.47e-01 75.5% 52.9%
4993857 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.56 37.0 4.28e-01 98.2% 93.8%
3941995 131.1.1.13 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_5 0.55 47.0 3.99e-01 98.2% 75.5%
3518177 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.55 49.0 4.22e-01 100.0% 81.1%
4941741 180.1.1.1 alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 0.54 45.0 4.15e-01 91.8% 75.9%
3269624 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.53 41.0 4.39e-01 93.6% 98.9%
4354447 1197.1.1.1 alpha bundles › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › G3P_acyltransf 0.52 45.0 3.82e-01 93.6% 78.9%
3735906 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 43.0 3.38e-01 90.9% 78.0%
3208493 1065.1.1.1 alpha bundles › SPX domain › SPX domain › SPX domain › SPX 0.52 42.0 3.32e-01 88.2% 45.0%
4931030 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.52 43.0 4.32e-01 91.8% 97.4%
3738663 109.4.1.70 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID 0.50 45.0 3.88e-01 95.5% 80.6%
3611437 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.50 40.0 3.53e-01 87.3% 58.7%
3761453 633.3.1.1 alpha bundles › Bromodomain-like › Mob1/phocein › Mob1/phocein › Mob1_phocein 0.50 43.0 3.65e-01 97.3% 74.4%
D3 high residues 213-394
PDB
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.85 57.0 5.89e-01 95.1% 71.7%
3nkhA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.79 63.0 5.88e-01 95.1% 67.4%
3sqiA02 1.10.443.20 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Centromere DNA-binding protein complex CBF3 subunit, domain 2 0.72 59.0 4.94e-01 95.1% 53.5%
4acoA02 1.10.443.20 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Centromere DNA-binding protein complex CBF3 subunit, domain 2 0.71 61.0 4.84e-01 95.1% 48.0%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.63 32.0 4.35e-01 91.8% 100.0%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.58 54.0 5.30e-01 98.4% 93.8%
6pcoC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 34.0 3.87e-01 99.5% 84.1%
2iaiA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 28.0 3.21e-01 83.0% 69.9%
1rp3A01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.51 24.0 3.34e-01 82.4% 91.8%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4979786 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.91 53.0 6.59e-01 95.1% 89.2%
3588206 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.90 64.0 7.07e-01 95.1% 88.0%
3588110 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.89 64.0 7.30e-01 95.1% 95.0%
5054951 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 55.0 6.53e-01 94.5% 88.5%
4034079 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 59.0 6.82e-01 91.2% 91.9%
4659012 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 64.0 7.19e-01 95.1% 93.8%
3589779 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 65.0 7.14e-01 95.1% 93.3%
3589872 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 62.0 6.89e-01 94.5% 90.7%
3587110 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 61.0 6.70e-01 100.0% 88.7%
4933965 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 53.0 6.42e-01 94.5% 92.0%
5007182 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.84 47.0 5.12e-01 95.1% 65.2%
4313957 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 58.0 6.74e-01 95.1% 95.6%
5003452 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 55.0 6.51e-01 96.2% 93.8%
3587645 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 58.0 6.69e-01 95.1% 96.3%
4940128 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.81 55.0 6.57e-01 95.1% 99.2%
4137254 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 63.0 6.78e-01 95.1% 92.9%
4200953 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 60.0 6.53e-01 94.5% 89.7%
4082783 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 59.0 6.27e-01 94.5% 85.0%
4134015 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 63.0 6.82e-01 94.5% 94.2%
4969226 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 54.0 6.24e-01 100.0% 91.9%
4053930 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 60.0 6.67e-01 95.1% 94.0%
1267972 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 64.0 6.87e-01 94.5% 96.2%
3587374 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 64.0 6.79e-01 95.1% 92.7%
2805 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 54.0 6.13e-01 95.1% 90.7%
4180367 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 60.0 6.35e-01 95.1% 89.7%
4940634 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.76 55.0 6.11e-01 100.0% 92.4%
5058518 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 53.0 5.22e-01 100.0% 67.7%
4934137 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.74 56.0 6.10e-01 100.0% 91.0%
3782562 101.1.8.7 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › NDC10_II 0.73 60.0 6.36e-01 92.9% 95.6%
2426729 101.1.8.7 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › NDC10_II 0.71 62.0 6.34e-01 94.0% 93.8%
5018485 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.67 56.0 5.87e-01 100.0% 93.5%
3881395 101.1.8.12 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › DUF3504 0.62 52.0 5.38e-01 95.1% 92.0%
3887879 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.61 54.0 5.58e-01 100.0% 97.1%
3921603 101.1.8.12 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › DUF3504 0.57 49.0 4.88e-01 94.0% 87.4%
3708129 603.5.1.0 alpha bundles › STAT-like › FlgN-like › FlgN-like 0.51 34.0 3.72e-01 84.1% 80.0%
3236690 5059.1.1.0 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.50 39.0 3.32e-01 81.3% 92.0%
D4 medium residues 198-212_395-460
PDB