←Back to structures

ON453900.1__WAK79442.1__X__00018

Bact-Vir

ON453900.1__WAK79442.1__X__00018

Identity

Accession:
ON453900 ↗
Kingdom:
phage

Quality

80.8 mean pLDDT

Taxonomy

Clostridium_phage_Maintenon

TaxID: 2951972

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 128-188
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.69 40.0 3.37e-01 100.0% 33.7%
2eigA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.66 40.0 2.67e-01 100.0% 16.1%
3ci0J02 2.10.70.20 Mainly Beta › Ribbon › Complement Module; domain 1 › gspk-gspi-gspj complex like domains 0.64 45.0 4.85e-01 96.7% 90.0%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.63 39.0 3.91e-01 96.7% 61.9%
4wiwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.62 40.0 3.89e-01 98.4% 58.0%
3vfcA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.61 45.0 3.33e-01 100.0% 32.2%
2gdqA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 44.0 3.65e-01 100.0% 44.9%
4ew6A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.60 38.0 2.67e-01 100.0% 20.6%
5tkyA04 2.60.34.10 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › Substrate Binding Domain Of DNAk; Chain A, domain 1 0.57 50.0 4.07e-01 98.4% 62.9%
3dg6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 42.0 3.42e-01 100.0% 42.1%
3qldA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 40.0 3.03e-01 100.0% 31.6%
5g5gB02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.55 35.0 3.11e-01 96.7% 40.4%
4d7pA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.55 48.0 4.17e-01 100.0% 74.0%
4liqE05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 48.0 4.05e-01 100.0% 77.0%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.54 32.0 2.76e-01 98.4% 33.7%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 31.0 3.11e-01 100.0% 53.0%
1ym5A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.52 33.0 2.58e-01 98.4% 24.7%
5oj2B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 3.52e-01 100.0% 58.1%
2h41A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 3.87e-01 100.0% 64.2%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 32.0 3.11e-01 91.8% 53.5%
3wucB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.39e-01 98.4% 65.0%
2qsqB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 44.0 3.67e-01 100.0% 72.2%
5uv6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 40.0 3.63e-01 100.0% 64.3%
1ix2A00 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 45.0 3.78e-01 100.0% 98.0%
5icuA00 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 43.0 3.71e-01 100.0% 63.7%
2pvzB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.50 37.0 2.75e-01 86.9% 99.5%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4159881 220.1.1.197 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28623 0.84 49.0 4.18e-01 100.0% 37.9%
4423403 330.1.1.14 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › RecT 0.77 69.0 5.15e-01 98.4% 43.4%
3767975 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.73 41.0 3.34e-01 100.0% 30.0%
3396324 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.72 48.0 4.72e-01 100.0% 64.6%
3170091 243.1.1.116 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29059 0.72 44.0 3.59e-01 96.7% 34.5%
3865506 4210.1.1.3 ↗ a+b two layers › WGR domain › WGR domain › WGR domain › PF26166 0.72 45.0 3.63e-01 100.0% 35.5%
4961432 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.69 50.0 4.25e-01 100.0% 48.4%
3946418 6043.1.1.5 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like › DUF6392 0.64 39.0 2.93e-01 100.0% 24.8%
4983396 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.61 37.0 3.58e-01 96.7% 52.9%
4986344 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 36.0 3.03e-01 96.7% 33.3%
3241140 2004.1.1.199 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B 0.57 39.0 2.24e-01 72.1% 53.1%
3893838 10.10.1.1 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.55 41.0 3.08e-01 93.4% 32.7%
3480200 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 33.0 3.15e-01 98.4% 48.0%
4969458 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 49.0 4.07e-01 100.0% 62.9%
5004154 11.1.1.32 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Desulfoferrodox 0.54 49.0 3.94e-01 100.0% 54.8%
3383138 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 43.0 3.98e-01 100.0% 69.2%
4881877 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 47.0 3.85e-01 100.0% 59.3%
4976909 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 46.0 4.01e-01 98.4% 70.5%
5018866 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 40.0 3.63e-01 100.0% 60.0%
3249483 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 39.0 3.45e-01 100.0% 54.4%
3505821 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 46.0 3.87e-01 98.4% 65.7%
4981086 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 3.84e-01 100.0% 64.7%
3507058 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.78e-01 100.0% 64.7%
3263989 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 46.0 3.99e-01 100.0% 70.5%
4963509 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 47.0 3.95e-01 100.0% 68.0%
4380830 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 46.0 3.92e-01 100.0% 71.0%
3583120 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 42.0 3.70e-01 100.0% 61.1%
5053398 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 45.0 3.86e-01 98.4% 63.0%
3743386 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 41.0 2.90e-01 100.0% 28.6%
5027794 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 46.0 3.43e-01 100.0% 87.3%
5012584 11.1.4.106 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PEGA 0.51 36.0 3.43e-01 98.4% 61.3%
3623752 11.1.1.889 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26428 0.51 45.0 3.91e-01 100.0% 64.4%
3969772 11.1.1.42 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PapD_C 0.51 45.0 3.90e-01 100.0% 94.7%
3969165 11.1.1.42 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PapD_C 0.51 44.0 3.86e-01 100.0% 91.6%
4403433 11.1.1.11 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Usher 0.51 42.0 4.02e-01 100.0% 78.6%
3942573 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 31.0 3.18e-01 98.4% 62.1%
5037635 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 46.0 3.99e-01 100.0% 73.3%
3511338 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 41.0 3.69e-01 100.0% 63.3%
D2 medium residues 12-127_255-290
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jneA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.65 32.0 4.08e-01 92.1% 79.5%
2fdoA00 3.30.1970.10 Alpha Beta › 2-Layer Sandwich › AF2331-like fold › AF2331-like 0.61 29.0 3.64e-01 86.2% 73.1%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.57 22.0 2.96e-01 77.0% 64.9%
2jl8102 3.30.160.850 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 19.0 2.87e-01 92.1% 95.6%
1dq3A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.50 24.0 2.89e-01 78.9% 67.8%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3730463 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 35.0 3.73e-01 84.2% 74.6%
3578140 3937.1.1.2 ↗ alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.54 32.0 2.38e-01 75.7% 22.6%
3501345 162.1.1.0 ↗ alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD 0.53 38.0 4.39e-01 86.8% 99.1%
D3 medium residues 203-254
PDB
Domain cluster: representative
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3707146 2004.1.1.17 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.50 37.0 2.37e-01 86.5% 55.1%