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ON453900.1__WAK79511.1__X__00087
Bact-VirON453900.1__WAK79511.1__X__00087
Identity
- Accession:
- ON453900 ↗
- Kingdom:
- phage
Quality
72.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 702-825
Domain cluster:
rep: KT070867.1__AKQ08515.1__PBC2_200__00200__D100-133_156-223
D2
medium
residues 1-124
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rdeA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.76 | 49.0 | 5.13e-01 | 84.7% | 72.1% |
| 4p02A03 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.68 | 47.0 | 4.77e-01 | 84.7% | 71.3% |
| 2nwaA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.67 | 37.0 | 4.65e-01 | 79.8% | 89.3% |
| 3gs9A01 | 6.20.110.10 | Special › Other non-globular › Thrombin, subunit H › | 0.67 | 42.0 | 5.05e-01 | 83.1% | 100.0% |
| 3cb0D00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.65 | 53.0 | 4.84e-01 | 85.5% | 77.0% |
| 1ejeA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.64 | 52.0 | 4.44e-01 | 84.7% | 65.6% |
| 3bnkA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.64 | 52.0 | 4.46e-01 | 84.7% | 66.1% |
| 2r6vA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.64 | 52.0 | 4.67e-01 | 84.7% | 75.0% |
| 4l82A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.64 | 52.0 | 4.78e-01 | 85.5% | 77.6% |
| 2mklC00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 37.0 | 3.95e-01 | 74.2% | 66.7% |
| 1rz1A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.63 | 51.0 | 4.77e-01 | 85.5% | 77.6% |
| 1uscA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.63 | 51.0 | 4.47e-01 | 85.5% | 68.5% |
| 4f07E00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.63 | 51.0 | 4.80e-01 | 85.5% | 78.5% |
| 3nfwA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 51.0 | 4.45e-01 | 85.5% | 67.0% |
| 2d37A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 50.0 | 4.63e-01 | 84.7% | 76.1% |
| 2rc5B01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 42.0 | 4.03e-01 | 79.8% | 72.9% |
| 4depC02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 33.0 | 3.56e-01 | 85.5% | 71.6% |
| 1wznA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.52 | 24.0 | 3.45e-01 | 98.4% | 98.2% |
| 2z0bE00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 37.0 | 3.91e-01 | 90.3% | 87.7% |
| 1ye9A02 | 2.40.470.10 | Mainly Beta › Beta Barrel › catalase hpii fold › catalase hpii domain | 0.51 | 31.0 | 3.29e-01 | 98.4% | 66.1% |
| 5jipA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 36.0 | 4.13e-01 | 80.6% | 100.0% |
| 1a21A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 38.0 | 4.26e-01 | 91.9% | 100.0% |
| 4akrA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.51 | 29.0 | 2.78e-01 | 87.1% | 46.9% |
| 3d2lA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.50 | 26.0 | 3.45e-01 | 100.0% | 95.2% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4957565 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.74 | 60.0 | 6.03e-01 | 84.7% | 100.0% |
| 3275908 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 38.0 | 4.79e-01 | 73.4% | 97.1% |
| 5079559 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.66 | 54.0 | 5.57e-01 | 85.5% | 98.3% |
| 4413783 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.59 | 41.0 | 3.26e-01 | 79.0% | 36.7% |
| 3992448 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.54 | 31.0 | 3.08e-01 | 98.4% | 51.5% |
| 1388524 | 243.17.1.1 ↗ | a+b two layers › Cystatin-like › C-terminal domain of PatG › C-terminal domain of PatG › PatG_C | 0.51 | 29.0 | 2.88e-01 | 100.0% | 49.2% |
| 3654219 | 9.13.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › Dirigent | 0.50 | 30.0 | 2.84e-01 | 85.5% | 47.7% |
D3
medium
residues 125-200
Domain cluster:
rep: OP172637.1__WAX05372.1__AC844P3_00043__00043__D113-215
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wruA02 | 3.55.50.10 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains | 0.83 | 76.0 | 7.27e-01 | 100.0% | 95.5% |
| 3d37A02 | 3.55.50.10 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains | 0.81 | 74.0 | 7.14e-01 | 100.0% | 96.5% |
| 4jtmA00 | 3.55.50.30 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › | 0.76 | 66.0 | 6.55e-01 | 97.4% | 95.1% |
| 2wzpR02 | 3.55.50.50 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Phage tail base-plate attachment protein, domain D4 | 0.74 | 66.0 | 6.06e-01 | 100.0% | 96.0% |
| 3gs9A02 | 3.55.50.40 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › | 0.74 | 65.0 | 6.19e-01 | 100.0% | 88.0% |
| 7pmpA01 | 3.55.50.30 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › | 0.71 | 60.0 | 6.08e-01 | 94.7% | 98.6% |
| 2m5jA00 | 3.55.50.30 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › | 0.69 | 59.0 | 5.35e-01 | 97.4% | 70.1% |
| 4q20A02 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.53 | 41.0 | 3.37e-01 | 84.2% | 93.3% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3966286 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.84 | 73.0 | 7.44e-01 | 97.4% | 96.0% |
| 185933 | 3070.1.1.12 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › Gp44-like_2nd | 0.83 | 76.0 | 7.27e-01 | 100.0% | 95.5% |
| 4846239 | 3070.1.1.12 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › Gp44-like_2nd | 0.82 | 74.0 | 7.19e-01 | 100.0% | 94.0% |
| 4048982 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.81 | 73.0 | 7.23e-01 | 100.0% | 93.8% |
| 4008875 | 3070.1.1.4 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › STN | 0.81 | 70.0 | 7.13e-01 | 97.4% | 96.0% |
| 3974036 | 3070.1.1.10 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › T3S_SPI-1_N0 | 0.81 | 72.0 | 7.24e-01 | 100.0% | 97.3% |
| 184487 | 3070.1.1.12 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › Gp44-like_2nd | 0.81 | 74.0 | 7.14e-01 | 100.0% | 96.5% |
| 4929757 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.81 | 73.0 | 6.44e-01 | 100.0% | 92.7% |
| 3981376 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.80 | 70.0 | 7.12e-01 | 100.0% | 97.3% |
| 3948879 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.80 | 71.0 | 7.14e-01 | 100.0% | 98.7% |
| 4957566 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.80 | 72.0 | 6.84e-01 | 100.0% | 93.3% |
| 185652 | 3070.1.1.4 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › STN | 0.79 | 70.0 | 5.87e-01 | 100.0% | 57.8% |
| 4988104 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.78 | 69.0 | 6.60e-01 | 100.0% | 94.4% |
| 4809347 | 3070.1.1.16 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › PF30637 | 0.77 | 68.0 | 6.70e-01 | 100.0% | 91.5% |
| 3977381 | 3070.1.1.2 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › Phage_GPD | 0.77 | 70.0 | 6.72e-01 | 100.0% | 91.8% |
| 3967020 | 3070.1.1.4 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › STN | 0.75 | 65.0 | 6.28e-01 | 97.4% | 87.1% |
| 1124160 | 3070.1.1.9 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › Caud_bapl16_2nd | 0.74 | 66.0 | 5.94e-01 | 100.0% | 90.5% |
| 1070142 | 3070.1.1.11 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › type_II_gspD_N0 | 0.74 | 64.0 | 6.29e-01 | 96.1% | 93.8% |
| 3972183 | 3070.1.1.4 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › STN | 0.73 | 62.0 | 5.99e-01 | 96.1% | 84.7% |
| 3968589 | 3070.1.1.4 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › STN | 0.72 | 63.0 | 6.26e-01 | 98.7% | 93.8% |
| 3974451 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.72 | 61.0 | 5.89e-01 | 94.7% | 83.5% |
| 3967742 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.70 | 58.0 | 5.64e-01 | 93.4% | 85.7% |
| 1146585 | 3070.1.1.4 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › STN | 0.69 | 59.0 | 5.35e-01 | 97.4% | 70.1% |
| None | — | 0.59 | 37.0 | 2.77e-01 | 82.9% | 24.1% |
D4
medium
residues 201-220_272-329
Domain cluster:
rep: MK448737.1__QBX17433.1__Javan351_0049__00049__D187-212_269-321
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1k28D03 | 2.40.30.150 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 | 0.74 | 64.0 | 6.02e-01 | 94.9% | 94.7% |
| 1wruA01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.74 | 67.0 | 5.08e-01 | 98.7% | 49.7% |
| 2gmqA00 | 2.40.450.10 | Mainly Beta › Beta Barrel › PUA domain-like fold › PUA domain-like domain | 0.65 | 56.0 | 5.19e-01 | 96.2% | 88.9% |
| 1shyA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.58 | 49.0 | 4.56e-01 | 96.2% | 73.5% |
| 1r0vA01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.58 | 36.0 | 3.62e-01 | 74.4% | 61.0% |
| 2kmwA01 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 45.0 | 4.08e-01 | 84.6% | 73.1% |
| 3wdhA01 | 2.60.40.2320 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 39.0 | 3.69e-01 | 83.3% | 62.5% |
| 2zbvC02 | 2.40.30.90 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like | 0.54 | 44.0 | 4.09e-01 | 89.7% | 75.5% |
| 1gmeA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 46.0 | 3.69e-01 | 93.6% | 88.0% |
| 5b6iA02 | 2.40.30.90 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like | 0.53 | 44.0 | 4.03e-01 | 92.3% | 75.7% |
| 1ejfA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 43.0 | 3.89e-01 | 89.7% | 73.6% |
| 1j71A02 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.53 | 44.0 | 3.59e-01 | 96.2% | 76.4% |
| 4wz9A01 | 2.60.40.1730 | Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain | 0.53 | 39.0 | 2.98e-01 | 92.3% | 29.9% |
| 3hrpA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 37.0 | 3.51e-01 | 83.3% | 61.1% |
| 2j3rB00 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.51 | 44.0 | 3.54e-01 | 97.4% | 75.2% |
| 1a10I00 | 3.30.10.10 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › Trypsin Inhibitor V, subunit A | 0.51 | 29.0 | 3.18e-01 | 76.9% | 66.7% |
| 6j7cA02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.51 | 42.0 | 3.30e-01 | 91.0% | 44.8% |
| 2cw5A02 | 2.40.30.90 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like | 0.51 | 38.0 | 3.72e-01 | 89.7% | 71.9% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3943170 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.77 | 69.0 | 6.61e-01 | 97.4% | 97.8% |
| 5002753 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.77 | 68.0 | 6.60e-01 | 96.2% | 98.8% |
| 4647050 | 1.1.13.56 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › YQBQ | 0.76 | 67.0 | 6.64e-01 | 94.9% | 95.0% |
| 3965594 | 1.1.13.53 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage-tail_3 | 0.75 | 68.0 | 6.32e-01 | 97.4% | 97.9% |
| 3981227 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.75 | 66.0 | 6.78e-01 | 96.2% | 100.0% |
| 3941539 | 1.1.13.40 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail | 0.71 | 59.0 | 5.31e-01 | 89.7% | 97.1% |
| 3969448 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.70 | 56.0 | 5.15e-01 | 89.7% | 99.0% |
| 3968713 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.68 | 58.0 | 5.55e-01 | 93.6% | 91.1% |
| 5037092 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.66 | 47.0 | 4.95e-01 | 74.4% | 91.4% |
| 4519111 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.65 | 52.0 | 4.98e-01 | 93.6% | 75.6% |
| 4503642 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.64 | 35.0 | 3.23e-01 | 74.4% | 40.0% |
| 4285300 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.64 | 53.0 | 5.01e-01 | 92.3% | 100.0% |
| 3590201 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.64 | 54.0 | 4.88e-01 | 94.9% | 87.0% |
| 4344451 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.63 | 35.0 | 3.26e-01 | 75.6% | 41.0% |
| 3714360 | 4052.1.1.0 ↗ | beta complex topology › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like | 0.62 | 52.0 | 4.83e-01 | 93.6% | 86.0% |
| 1879702 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.60 | 50.0 | 4.79e-01 | 93.6% | 96.8% |
| 3822637 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.58 | 43.0 | 4.05e-01 | 85.9% | 65.3% |
| 3264338 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 44.0 | 4.23e-01 | 89.7% | 73.3% |
| 3660388 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 43.0 | 4.20e-01 | 91.0% | 73.3% |
| 3624453 | 11.1.1.813 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › INTS4_C | 0.56 | 43.0 | 3.55e-01 | 83.3% | 53.8% |
| 3929781 | 11.1.1.813 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › INTS4_C | 0.55 | 42.0 | 3.49e-01 | 84.6% | 54.5% |
| 4941513 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.54 | 44.0 | 4.03e-01 | 93.6% | 96.4% |
| 4022321 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.54 | 44.0 | 3.61e-01 | 88.5% | 64.1% |
| 3515228 | 11.1.1.813 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › INTS4_C | 0.54 | 42.0 | 3.60e-01 | 84.6% | 61.7% |
| 5040611 | 1.1.4.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C | 0.53 | 44.0 | 4.09e-01 | 92.3% | 78.0% |
| 3265117 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 41.0 | 3.63e-01 | 88.5% | 69.6% |
| 3605286 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.51 | 35.0 | 3.30e-01 | 73.1% | 60.0% |
D5
medium
residues 221-271
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3cddB03 | 3.30.1920.10 | Alpha Beta › 2-Layer Sandwich › Phage tail proteins - 2 layer sandwich fold › Baseplate protein-like domains - 2 layer sandwich fold | 0.69 | 57.0 | 5.47e-01 | 94.1% | 96.6% |
| 3d37A03 | 3.30.1920.10 | Alpha Beta › 2-Layer Sandwich › Phage tail proteins - 2 layer sandwich fold › Baseplate protein-like domains - 2 layer sandwich fold | 0.64 | 51.0 | 4.91e-01 | 94.1% | 98.3% |
| 1wx9A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.61 | 39.0 | 3.35e-01 | 82.4% | 39.5% |
| 3uh0A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.58 | 46.0 | 3.64e-01 | 96.1% | 99.2% |
| 2dziA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.57 | 37.0 | 3.27e-01 | 80.4% | 42.0% |
| 3r4vA01 | 3.40.50.1440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain | 0.57 | 43.0 | 2.85e-01 | 96.1% | 60.5% |
| 3h5iA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 42.0 | 3.26e-01 | 84.3% | 99.2% |
| 3fleA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 45.0 | 2.96e-01 | 94.1% | 100.0% |
| 3ed3A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 44.0 | 3.57e-01 | 100.0% | 84.3% |
| 3lp5A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 42.0 | 2.88e-01 | 100.0% | 93.6% |
| 3bxwA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 35.0 | 2.32e-01 | 72.5% | 29.0% |
| 1v9kA00 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.51 | 35.0 | 2.37e-01 | 74.5% | 36.1% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4992266 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.66 | 53.0 | 3.31e-01 | 92.2% | 77.1% |
| 3278987 | 268.1.1.0 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related | 0.60 | 46.0 | 4.07e-01 | 86.3% | 71.2% |
| 3362660 | 2003.1.2.150 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3, GGR_cat | 0.57 | 48.0 | 2.92e-01 | 100.0% | 75.3% |
| 3520928 | 7579.1.1.30 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF915 | 0.57 | 43.0 | 2.79e-01 | 90.2% | 22.4% |
| 5010249 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.57 | 38.0 | 3.07e-01 | 72.5% | 80.8% |
| 3289372 | 268.1.1.7 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › Wyosine_form | 0.56 | 44.0 | 3.57e-01 | 84.3% | 66.3% |
| None | — | 0.56 | 44.0 | 2.76e-01 | 100.0% | 88.8% | |
| 4977799 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.55 | 47.0 | 2.84e-01 | 100.0% | 77.5% |
| 5042846 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.55 | 46.0 | 2.78e-01 | 100.0% | 76.1% |
| 5061114 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.55 | 43.0 | 2.69e-01 | 94.1% | 83.9% |
| 2601264 | 7579.1.1.30 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF915 | 0.54 | 42.0 | 2.88e-01 | 100.0% | 93.6% |
| 3944424 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.54 | 44.0 | 2.74e-01 | 100.0% | 88.6% |
| 3611040 | 2005.1.1.10 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF | 0.54 | 41.0 | 2.89e-01 | 92.2% | 72.5% |
| 3593868 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.53 | 40.0 | 2.93e-01 | 94.1% | 77.4% |
| 3268145 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.51 | 40.0 | 3.33e-01 | 96.1% | 74.5% |
| 5037328 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.50 | 35.0 | 2.65e-01 | 76.5% | 28.6% |
D6
medium
residues 1145-1226
D7
medium
residues 1257-1330
Domain cluster:
rep: IMGVR_UViG_3300010235_000004-3300010235-Ga0136247_100002931__D99-185
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gudA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.87 | 80.0 | 6.74e-01 | 100.0% | 84.9% |
| 3gw6D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.85 | 78.0 | 5.98e-01 | 100.0% | 73.9% |
| 2ab5A02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.57 | 49.0 | 4.13e-01 | 100.0% | 85.8% |
| 1b96A00 | 3.40.600.10 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II | 0.56 | 49.0 | 3.46e-01 | 100.0% | 81.6% |
| 2mcqA01 | 3.30.300.90 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like | 0.55 | 35.0 | 3.57e-01 | 97.3% | 65.3% |
| 4lq0A01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.54 | 46.0 | 3.82e-01 | 100.0% | 62.5% |
| 3nb0D01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.53 | 40.0 | 2.70e-01 | 81.1% | 33.4% |
| 2mh9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 45.0 | 3.86e-01 | 98.6% | 85.8% |
| 2e5vA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 40.0 | 2.84e-01 | 86.5% | 97.8% |
| 1mukA02 | 3.90.1850.10 | Alpha Beta › Alpha-Beta Complex › RNA-directed RNA polymerase lambda-3 › RNA-directed RNA polymerase lambda-3 | 0.53 | 39.0 | 2.40e-01 | 79.7% | 16.1% |
| 2wteA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 44.0 | 4.46e-01 | 100.0% | 98.6% |
| 1ub9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 44.0 | 4.12e-01 | 100.0% | 79.0% |
| 5hn3A00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.52 | 40.0 | 2.65e-01 | 83.8% | 95.2% |
| 2gxgA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 44.0 | 3.70e-01 | 100.0% | 56.4% |
| 1p4xA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 44.0 | 3.83e-01 | 100.0% | 65.0% |
| 1lkxC03 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.52 | 45.0 | 4.04e-01 | 100.0% | 73.8% |
| 1bm9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 44.0 | 3.87e-01 | 100.0% | 75.8% |
| 1lj9B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 43.0 | 3.57e-01 | 100.0% | 57.0% |
| 1stzA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 43.0 | 4.16e-01 | 100.0% | 88.2% |
| 2nnnC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 42.0 | 3.63e-01 | 100.0% | 62.1% |
| 6abqB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 43.0 | 3.91e-01 | 100.0% | 76.4% |
| 3l9fA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 43.0 | 4.09e-01 | 100.0% | 94.4% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 382463 | 3240.1.1.1 ↗ | alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 | 0.86 | 79.0 | 6.62e-01 | 100.0% | 84.2% |
| 3839832 | 3799.1.1.1 ↗ | alpha bundles › SabA N-terminal extracellular adhesion domain › SabA N-terminal extracellular adhesion domain › SabA N-terminal extracellular adhesion domain › SabA_adhesion | 0.67 | 59.0 | 3.60e-01 | 100.0% | 98.6% |
| 3839702 | 3799.1.1.1 ↗ | alpha bundles › SabA N-terminal extracellular adhesion domain › SabA N-terminal extracellular adhesion domain › SabA N-terminal extracellular adhesion domain › SabA_adhesion | 0.65 | 57.0 | 3.56e-01 | 100.0% | 100.0% |
| 3338778 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.57 | 46.0 | 3.23e-01 | 90.5% | 40.8% |
| 5040059 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 49.0 | 4.23e-01 | 100.0% | 83.5% |
| 4011414 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.54 | 39.0 | 2.90e-01 | 78.4% | 53.0% |
| 4962334 | 150.1.2.7 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › PaaA_PaaC | 0.54 | 45.0 | 3.14e-01 | 100.0% | 31.9% |
| 3562527 | 386.1.1.358 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Zf-C2H2_ZNF451 | 0.53 | 30.0 | 3.33e-01 | 86.5% | 68.3% |
| 3423775 | 601.16.1.8 ↗ | alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › DUF1218 | 0.53 | 45.0 | 3.65e-01 | 97.3% | 81.3% |
| 3170774 | 109.4.1.3166 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29342, PF29343 | 0.53 | 41.0 | 2.75e-01 | 89.2% | 38.1% |
| 3684771 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.53 | 42.0 | 3.47e-01 | 90.5% | 61.4% |
| 3592333 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 38.0 | 3.98e-01 | 100.0% | 93.8% |
| 4943120 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 44.0 | 4.05e-01 | 100.0% | 77.0% |
| 4968695 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.52 | 42.0 | 3.33e-01 | 91.9% | 52.5% |
| 3714819 | 593.1.1.0 ↗ | alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like | 0.51 | 43.0 | 3.35e-01 | 100.0% | 51.6% |
| 5057064 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.51 | 44.0 | 3.91e-01 | 97.3% | 71.8% |
| 3713637 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 43.0 | 3.75e-01 | 94.6% | 88.7% |
| 4928248 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 43.0 | 3.67e-01 | 100.0% | 59.2% |
| 3504151 | 3382.1.1.1 ↗ | alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 › wnt | 0.51 | 42.0 | 2.82e-01 | 97.3% | 47.3% |
| 4138755 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.51 | 43.0 | 3.64e-01 | 100.0% | 57.0% |
| 3964741 | 101.1.2.368 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_36 | 0.50 | 43.0 | 4.00e-01 | 100.0% | 86.0% |
| 3268630 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 43.0 | 4.00e-01 | 100.0% | 76.8% |