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ON453901.1__WAK79539.1__X__00012

Bact-Vir

ON453901.1__WAK79539.1__X__00012

Identity

Accession:
ON453901 ↗
Kingdom:
phage

Quality

86.0 mean pLDDT

Taxonomy

Clostridium_phage_Saumur

TaxID: 2951973

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-112
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1chkA02 3.30.386.10 Alpha Beta › 2-Layer Sandwich › Chitosanase; Chain A, domain 2 › Chitosanase, subunit A, domain 2 0.77 70.0 6.95e-01 100.0% 96.8%
4dhiB02 1.20.1300.20 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Peptidase C65 Otubain, subdomain 2 0.57 49.0 4.28e-01 96.7% 96.6%
1pmiA02 1.10.441.10 Mainly Alpha › Orthogonal Bundle › Phosphomannose Isomerase; domain 2 › Phosphomannose Isomerase, domain 2 0.56 40.0 3.50e-01 73.6% 100.0%
4nqfA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.56 46.0 3.98e-01 91.2% 79.3%
4w8kA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.56 41.0 3.23e-01 78.0% 88.9%
3u3wA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 40.0 4.40e-01 75.8% 100.0%
3hhwK01 1.10.3570.10 Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain 0.55 36.0 2.92e-01 100.0% 33.3%
3l44A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 43.0 3.46e-01 84.6% 54.1%
3e9lA02 1.20.80.40 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region 0.54 44.0 4.42e-01 90.1% 97.9%
1aepA00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.53 45.0 3.93e-01 98.9% 92.2%
3zs6A02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.51 41.0 3.84e-01 94.5% 100.0%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1125597 235.1.1.8 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glyco_hydro_46 0.77 71.0 5.06e-01 100.0% 40.0%
3251018 135.1.1.1 ↗ alpha arrays › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › G-alpha 0.60 48.0 4.39e-01 92.3% 65.0%
3576527 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.57 40.0 3.41e-01 73.6% 69.3%
3926669 4967.1.1.0 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.57 43.0 4.55e-01 86.8% 92.5%
3316193 601.3.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain 0.57 39.0 3.94e-01 85.7% 72.2%
4969344 4337.1.1.0 ↗ a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain 0.54 47.0 4.53e-01 98.9% 84.8%
4436308 4337.1.1.1 ↗ a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › MutL_C 0.54 45.0 4.47e-01 92.3% 88.4%
4597953 4337.1.1.0 ↗ a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain 0.53 46.0 4.34e-01 98.9% 83.5%
3801173 4337.1.1.0 ↗ a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain 0.52 46.0 4.35e-01 98.9% 87.0%
3236793 5001.1.1.33 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srh 0.52 42.0 2.92e-01 89.0% 91.3%
3779549 4337.1.1.1 ↗ a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › MutL_C 0.52 46.0 4.31e-01 100.0% 84.1%
4987688 3684.1.1.0 ↗ alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.51 41.0 3.60e-01 87.9% 85.0%
3635270 3016.1.1.1 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 0.50 43.0 3.99e-01 97.8% 76.7%
D2 high residues 211-378
PDB
Domain cluster: rep: OR420741.1__WOZ55670.1__CRP118_gp39__00039__D1-140
D3 medium residues 1-21_113-206
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
152lA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.72 56.0 4.92e-01 81.7% 96.3%
5dsgA01 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.71 55.0 5.70e-01 81.7% 100.0%
6v3zA00 1.20.141.10 Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 0.66 49.0 4.27e-01 79.1% 99.4%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 43.0 4.89e-01 90.4% 100.0%
4f0zB00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 34.0 3.12e-01 77.4% 40.0%
3v2lA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.57 39.0 3.85e-01 100.0% 65.8%
1bqbA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.56 47.0 4.34e-01 89.6% 92.4%
4a8eA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.56 38.0 4.26e-01 96.5% 92.0%
1gqeA01 1.20.58.410 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Release factor 0.55 27.0 2.72e-01 97.4% 44.2%
6wk3A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 43.0 3.97e-01 81.7% 89.0%
2dgzA01 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.53 36.0 4.01e-01 99.1% 91.0%
3hyuA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 41.0 3.88e-01 83.5% 96.5%
4mvfA03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 36.0 3.20e-01 89.6% 46.6%
1x8zB00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.52 35.0 3.32e-01 70.4% 77.6%
2rfqC03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.51 35.0 3.14e-01 72.2% 85.7%
1n93X01 1.10.3040.10 Mainly Alpha › Orthogonal Bundle › borna disease virus nucleoprotein, domain 1 › borna disease virus nucleoprotein, domain 1 0.51 38.0 3.14e-01 79.1% 85.1%
2hs5A02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.50 40.0 3.76e-01 92.2% 69.3%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3717850 108.1.1.99 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 0.60 34.0 3.64e-01 77.4% 62.0%
3707744 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 42.0 4.38e-01 97.4% 81.9%
4965156 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 38.0 3.66e-01 79.1% 57.7%
4216298 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.55 40.0 4.25e-01 96.5% 89.0%
3569105 102.1.1.2 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC 0.55 40.0 4.30e-01 98.3% 92.6%
None — 0.53 34.0 2.99e-01 85.2% 41.1%
3773613 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.52 45.0 4.45e-01 97.4% 97.6%
3388455 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.52 36.0 3.62e-01 71.3% 99.1%
3926776 3930.1.1.0 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase 0.51 37.0 3.52e-01 92.2% 63.0%
3225981 5067.1.1.5 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Sterol-sensing 0.51 41.0 3.37e-01 87.8% 76.1%
3518945 524.1.1.0 ↗ alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p 0.50 43.0 3.94e-01 92.2% 93.3%
D4 medium residues 466-562
PDB
Domain cluster: rep: MH884509.1__AYP68381.1__BboS125_00011__00011__D179-270
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF01476.27 best LysM 50.0 3.20e-13 46.4% 97.7%
PF01476.27 LysM 72.4 3.30e-20 45.4% 100.0%