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ON453902.1__WAK79627.1__X__00019

Bact-Vir

ON453902.1__WAK79627.1__X__00019

Identity

Accession:
ON453902 ↗
Kingdom:
phage

Quality

94.6 mean pLDDT

Taxonomy

Clostridium_phage_Villandry

TaxID: 2951974

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-99
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20941.4 best DUF6848 117.0 5.80e-34 96.9% 85.9%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fgxA00 3.30.2220.10 Alpha Beta › 2-Layer Sandwich › rbstp2171 › rbstp2171 0.91 79.0 7.94e-01 97.9% 90.6%
2d73A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 47.0 3.50e-01 99.0% 84.5%
3ke2B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 29.0 2.94e-01 87.6% 47.9%
1fuiA03 3.20.14.10 Alpha Beta › Alpha-Beta Barrel › L-fucose Isomerase; Chain A, domain 3 › L-fucose/L-arabinose isomerase, C-terminal 0.55 42.0 3.15e-01 86.6% 31.9%
3mzkB03 1.20.58.940 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 31.0 3.61e-01 78.4% 80.0%
1hwyA02 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.53 42.0 3.66e-01 86.6% 67.1%
1p1hB01 3.30.2360.10 Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain 0.52 41.0 3.49e-01 88.7% 85.8%
5ib9A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.52 46.0 3.33e-01 100.0% 43.2%
4hstB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.52 30.0 3.54e-01 72.2% 82.4%
1fm2B03 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.51 26.0 3.10e-01 88.7% 69.7%
2q3fA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 30.0 2.52e-01 78.4% 31.3%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.51 29.0 3.20e-01 81.4% 68.8%
2z5bB01 3.30.230.90 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.51 41.0 3.85e-01 87.6% 98.3%
1v5oA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.50 37.0 3.65e-01 93.8% 72.5%
2byvE05 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.50 34.0 3.66e-01 87.6% 84.8%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
185252 3547.1.1.1 ↗ a+b two layers › uncharacterised protein rbstp2171 › uncharacterised protein rbstp2171 › uncharacterised protein rbstp2171 › DUF6848 0.91 79.0 7.94e-01 97.9% 90.6%
4194213 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.67 34.0 3.99e-01 76.3% 68.6%
5022036 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 44.0 3.97e-01 80.4% 49.6%
3351840 284.1.3.2 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C 0.63 42.0 4.90e-01 91.8% 97.1%
3577144 3957.1.1.0 ↗ a+b two layers › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 0.62 31.0 4.10e-01 74.2% 92.0%
4324528 284.1.3.1 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.61 41.0 4.56e-01 88.7% 89.3%
3257563 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.58 41.0 4.15e-01 92.8% 74.7%
3312666 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 24.0 2.80e-01 89.7% 50.0%
3265336 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 40.0 3.85e-01 89.7% 66.4%
4024452 2011.1.1.21 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Gaa1 0.54 49.0 3.50e-01 100.0% 41.8%
3742903 221.1.1.182 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBL_AVO1 0.54 36.0 3.93e-01 87.6% 83.7%
5060353 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.54 42.0 3.39e-01 86.6% 55.1%
4930685 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.53 43.0 3.65e-01 87.6% 83.7%
3818469 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.53 39.0 3.64e-01 95.9% 60.8%
3351247 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.52 36.0 3.35e-01 72.2% 92.3%
3505737 230.5.1.0 ↗ a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain 0.52 31.0 3.18e-01 71.1% 60.0%
4028147 221.1.1.2 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.51 34.0 3.79e-01 87.6% 95.7%
4335178 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.51 35.0 3.43e-01 96.9% 63.6%
3570520 306.10.1.4 ↗ a+b two layers › Glucose permease domain IIB-like › H1 domain of KCTD12 › H1 domain of KCTD12 › KCTD11_21_C 0.51 39.0 3.46e-01 82.5% 63.4%
3214289 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.50 37.0 3.54e-01 78.4% 73.9%
5038015 3281.1.1.1 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M 0.50 36.0 2.42e-01 77.3% 20.2%