Back to structures

ON453902.1__WAK79630.1__X__00022

Bact-Vir

ON453902.1__WAK79630.1__X__00022

Identity

Accession:
ON453902 ↗
Kingdom:
phage

Quality

75.2 mean pLDDT

Taxonomy

TaxID: 2951974

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-67
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3w0fA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.70 59.0 4.32e-01 100.0% 42.6%
3e9sA02 1.10.8.1190 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Papain-like viral protease, thumb domain 0.68 53.0 4.11e-01 95.7% 55.6%
1irxA04 1.10.10.770 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.66 44.0 3.40e-01 70.2% 31.5%
6yetA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.65 56.0 4.58e-01 100.0% 73.6%
4p16A02 1.10.8.1190 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Papain-like viral protease, thumb domain 0.65 51.0 3.92e-01 95.7% 54.3%
1r6bX03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.64 54.0 4.43e-01 95.7% 68.2%
4fdyA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.64 53.0 3.68e-01 95.7% 41.0%
1a3qA01 2.60.40.340 Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain 0.64 44.0 2.95e-01 72.3% 20.7%
2kruA01 1.10.8.550 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B 0.64 51.0 5.04e-01 95.7% 98.1%
7f0uA01 1.10.8.1190 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Papain-like viral protease, thumb domain 0.63 49.0 4.10e-01 95.7% 70.5%
1zu4A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.63 51.0 4.37e-01 100.0% 62.1%
2y1eA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.63 53.0 4.42e-01 100.0% 77.0%
3b34A03 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.63 51.0 3.64e-01 100.0% 70.7%
2oznB01 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.62 48.0 4.11e-01 87.2% 82.5%
6qm7J00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.61 49.0 3.27e-01 93.6% 26.0%
1qamA02 1.10.8.100 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain 0.60 50.0 4.40e-01 100.0% 96.2%
6qwvH02 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.60 45.0 4.25e-01 83.0% 69.0%
3h0dB02 1.10.1200.150 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain 0.60 46.0 3.92e-01 87.2% 67.9%
1e1dA02 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.58 46.0 3.93e-01 91.5% 75.0%
3c8tA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.58 48.0 3.87e-01 95.7% 72.2%
1b8fA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.58 47.0 2.94e-01 100.0% 36.1%
2yqdA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.58 46.0 3.66e-01 100.0% 70.0%
3e70C01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.57 48.0 3.88e-01 100.0% 76.3%
2a0uB01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.57 47.0 3.40e-01 100.0% 36.9%
5ubvA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.57 48.0 4.27e-01 100.0% 76.1%
4azsA03 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.56 47.0 3.43e-01 100.0% 36.6%
2r18A02 1.10.8.880 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 0.55 43.0 4.11e-01 91.5% 91.5%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 42.0 3.54e-01 83.0% 72.2%
2bskE00 1.10.287.810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains 0.55 37.0 3.46e-01 72.3% 60.3%
3u9jA00 1.20.120.520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like 0.54 44.0 3.10e-01 91.5% 100.0%
3nz4B03 1.10.274.20 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 0.54 46.0 3.66e-01 100.0% 52.9%
4xr7E01 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.54 44.0 2.80e-01 100.0% 47.7%
4a3vB01 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.54 45.0 4.00e-01 100.0% 75.0%
5dicA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.54 44.0 3.48e-01 100.0% 46.1%
1vhnA02 1.10.1200.80 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Putative flavin oxidoreducatase; domain 2 0.53 44.0 3.95e-01 100.0% 66.2%
3llkA01 1.20.120.1960 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › QSOX sulfhydryl oxidase domain 0.53 45.0 3.62e-01 100.0% 61.2%
4az3A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 43.0 2.79e-01 97.9% 18.9%
2k77A00 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.51 41.0 3.07e-01 97.9% 74.5%
5cbgA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 36.0 2.89e-01 76.6% 43.1%
1bcrA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 43.0 2.74e-01 100.0% 22.0%
1td6A03 1.10.472.40 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Hypothetical protein mg237 homolog; domain 3 0.50 37.0 3.28e-01 97.9% 64.1%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3918298 108.1.1.27 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6 0.74 61.0 5.36e-01 97.9% 70.7%
3918837 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.73 61.0 5.30e-01 100.0% 66.3%
3233442 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.73 59.0 5.57e-01 97.9% 83.3%
3547911 108.1.1.29 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.72 60.0 5.07e-01 100.0% 62.4%
3614894 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.71 59.0 4.12e-01 100.0% 31.8%
3712067 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.70 58.0 4.85e-01 100.0% 67.8%
4991064 2002.1.1.25 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like 0.70 59.0 3.46e-01 97.9% 14.9%
4428371 130.1.1.3 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.69 47.0 4.86e-01 89.4% 75.6%
3740448 101.1.10.33 alpha arrays › HTH › HTH › Cyclin-like › Rrn7_cyclin_C 0.68 57.0 4.73e-01 95.7% 57.6%
4972876 102.2.1.0 alpha arrays › HhH/H2TH › H2TH › H2TH 0.68 56.0 4.22e-01 100.0% 42.3%
4361639 103.1.1.6 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.68 56.0 4.82e-01 95.7% 65.8%
4606468 101.35.1.21 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › DUF494 0.68 56.0 4.69e-01 100.0% 56.7%
4170883 103.7.1.2 alpha arrays › RuvA-C › Hypothetical protein MTH1615 › Hypothetical protein MTH1615 › DUF494 0.68 58.0 4.59e-01 100.0% 51.0%
4990527 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.68 58.0 4.35e-01 100.0% 68.3%
3931967 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.67 55.0 4.74e-01 97.9% 65.0%
5070095 102.2.1.3 alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.67 54.0 4.36e-01 100.0% 55.2%
3603449 102.2.1.3 alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.67 54.0 4.06e-01 100.0% 45.2%
3965492 101.35.1.21 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › DUF494 0.66 53.0 4.74e-01 97.9% 69.3%
5016168 102.2.1.0 alpha arrays › HhH/H2TH › H2TH › H2TH 0.65 52.0 4.63e-01 100.0% 77.5%
4507097 3601.1.1.1 alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Ad_Cy_reg 0.65 53.0 3.91e-01 100.0% 44.1%
5072380 102.2.1.0 alpha arrays › HhH/H2TH › H2TH › H2TH 0.65 53.0 4.34e-01 100.0% 61.0%
4223595 103.1.1.6 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.65 53.0 5.16e-01 97.9% 94.5%
5037883 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.64 52.0 4.89e-01 93.6% 75.0%
4597624 3601.1.1.1 alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Ad_Cy_reg 0.64 52.0 3.75e-01 100.0% 40.6%
3191284 130.1.1.16 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.63 42.0 4.20e-01 87.2% 66.0%
3738468 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.63 51.0 4.31e-01 100.0% 68.9%
3239915 181.2.1.0 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › CtsR dimerization domain › CtsR dimerization domain 0.63 51.0 4.74e-01 97.9% 81.5%
3478717 101.1.2.392 alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH 0.62 44.0 3.41e-01 78.7% 69.6%
3802239 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.62 47.0 4.68e-01 87.2% 90.0%
3626098 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 48.0 4.74e-01 87.2% 86.0%
5028647 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.61 50.0 4.18e-01 100.0% 82.8%
3703373 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 49.0 3.26e-01 100.0% 20.0%
5062887 102.2.1.0 alpha arrays › HhH/H2TH › H2TH › H2TH 0.61 50.0 3.92e-01 100.0% 47.8%
4994814 3110.1.1.0 a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain 0.60 49.0 3.05e-01 91.5% 27.6%
4665959 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.60 48.0 4.58e-01 97.9% 83.3%
3998355 190.1.1.25 alpha arrays › HMG-box-like › HMG-box › HMG-box › PF29135 0.60 44.0 3.84e-01 78.7% 54.3%
3229573 188.1.1.1 alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.60 49.0 3.20e-01 100.0% 68.6%
4968425 4009.1.1.1 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.59 50.0 4.51e-01 100.0% 85.7%
3871432 108.1.1.68 alpha arrays › EF-hand › EF-hand-related › EF-hand › TPGS1_C 0.59 48.0 3.67e-01 100.0% 86.2%
4296803 4957.1.1.4 a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit › DUF494 0.59 49.0 3.96e-01 100.0% 50.0%
3628125 632.15.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.58 45.0 3.94e-01 87.2% 80.0%
3335869 7579.1.1.5 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 0.56 46.0 3.11e-01 91.5% 23.8%
4182099 103.1.1.6 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.56 44.0 4.36e-01 93.6% 92.0%
3949333 148.1.3.172 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 0.56 48.0 4.09e-01 100.0% 75.0%
1229038 206.1.1.73 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, APH 0.56 47.0 3.05e-01 100.0% 21.9%
3480954 130.1.1.2 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › LEM 0.56 40.0 4.15e-01 78.7% 82.2%
4927753 632.2.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.56 46.0 4.18e-01 95.7% 87.7%
3164349 2003.1.2.11 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.56 43.0 2.79e-01 85.1% 91.4%
3229994 105.1.1.1 alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › HLH 0.54 39.0 3.63e-01 83.0% 67.7%
4016292 192.2.1.18 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ING 0.54 36.0 2.58e-01 70.2% 27.4%
3702846 308.1.1.1 a+b two layers › ClpS-like › ClpS-related › ClpS-related › Ribosomal_L12 0.53 41.0 3.82e-01 97.9% 87.1%
3330730 7579.1.1.5 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 0.52 45.0 2.86e-01 97.9% 20.0%
5043977 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.52 45.0 3.92e-01 100.0% 92.0%
4032282 101.1.4.29 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DUF2316 0.52 36.0 3.24e-01 83.0% 74.1%
3650011 7579.1.1.5 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 0.52 44.0 2.67e-01 97.9% 14.4%
3172800 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 41.0 2.54e-01 100.0% 53.1%
3919392 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.51 39.0 3.00e-01 89.4% 40.0%
3467737 7579.1.1.5 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 0.50 37.0 2.24e-01 91.5% 77.0%