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ON453902.1__WAK79649.1__X__00041

Bact-Vir

ON453902.1__WAK79649.1__X__00041

Identity

Accession:
ON453902 ↗
Kingdom:
phage

Quality

88.6 mean pLDDT

Taxonomy

Clostridium_phage_Villandry

TaxID: 2951974

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-79
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3anpB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.84 67.0 4.45e-01 85.2% 61.3%
1nh2B00 1.10.287.100 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.83 59.0 6.28e-01 75.9% 100.0%
3c3dA02 1.10.8.240 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › CofD-like domain 0.81 56.0 4.70e-01 72.2% 62.5%
2bzbA00 4.10.280.10 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain 0.80 61.0 5.90e-01 83.3% 77.4%
1dcnA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.78 53.0 4.80e-01 75.9% 52.8%
3jr7A01 3.40.50.10440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 0.75 52.0 3.98e-01 72.2% 90.7%
1ufhA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.73 54.0 3.93e-01 81.5% 28.4%
3jamD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.72 57.0 4.11e-01 83.3% 73.7%
1k32A03 3.30.750.44 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.67 48.0 4.43e-01 96.3% 58.3%
4dhiB02 1.20.1300.20 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Peptidase C65 Otubain, subdomain 2 0.64 48.0 3.56e-01 83.3% 37.9%
1icrA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.63 50.0 3.32e-01 96.3% 21.8%
2efeA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.62 53.0 4.68e-01 98.1% 65.4%
2klqA00 1.20.58.870 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 45.0 3.70e-01 100.0% 42.1%
1z5zA02 1.20.120.850 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SWI2/SNF2 ATPases, N-terminal domain 0.57 48.0 4.37e-01 96.3% 69.7%
2ddmB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.57 48.0 3.11e-01 96.3% 76.4%
2kwhA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 41.0 4.10e-01 79.6% 73.2%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3400315 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.87 59.0 5.91e-01 72.2% 69.1%
4969961 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.85 60.0 5.05e-01 74.1% 48.2%
5053838 873.1.1.13 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › ATC_hydrolase 0.78 67.0 4.58e-01 96.3% 28.1%
2993568 3839.1.1.1 ↗ alpha duplicates or obligate multimers › Viral phosphoprotein dimerization domain › Rabies virus phosphoprotein dimerization domain › Rabies virus phosphoprotein dimerization domain › PP_M1 0.77 61.0 6.29e-01 90.7% 90.2%
4192507 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.76 67.0 5.90e-01 100.0% 68.8%
3756571 109.4.1.390 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TH1 0.73 53.0 3.17e-01 79.6% 11.5%
5047182 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.72 66.0 6.15e-01 100.0% 86.2%
4564711 547.1.1.1 ↗ alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.71 63.0 5.63e-01 100.0% 76.0%
4506328 1054.1.1.1 ↗ alpha bundles › Arginine decarboxylase C-terminal helical extension › Arginine decarboxylase C-terminal helical extension › Arginine decarboxylase C-terminal helical extension › Arg_decarbox_C 0.70 50.0 5.20e-01 75.9% 84.0%
3846816 109.4.1.390 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TH1 0.70 56.0 3.22e-01 90.7% 13.9%
4946087 283.2.1.0 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.70 58.0 4.41e-01 92.6% 40.8%
4981035 5058.1.1.16 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 0.67 61.0 5.72e-01 100.0% 84.6%
5057910 304.103.1.1 ↗ a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase 0.66 50.0 3.36e-01 92.6% 21.6%
3963130 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.66 52.0 3.79e-01 90.7% 31.0%
3653791 3826.1.1.0 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.64 54.0 4.88e-01 94.4% 74.7%
4065157 2005.1.1.25 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › HIGH_NTase1 0.61 49.0 2.97e-01 92.6% 44.2%