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ON453904.1__WAK79736.1__X__00002

Bact-Vir

ON453904.1__WAK79736.1__X__00002

Identity

Accession:
ON453904 ↗
Kingdom:
phage

Quality

94.0 mean pLDDT

Taxonomy

TaxID: 2951976

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-74
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6nvxB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.75 39.0 3.83e-01 87.3% 46.8%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.71 53.0 5.39e-01 87.3% 80.3%
4wksC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.66 39.0 3.82e-01 87.3% 56.0%
1iyxA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.66 57.0 4.80e-01 100.0% 81.6%
1zj8A04 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.66 54.0 4.39e-01 95.8% 67.6%
1fm2B03 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.65 37.0 3.81e-01 85.9% 59.1%
2akjA03 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.65 48.0 4.02e-01 78.9% 49.6%
3gd6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.65 56.0 4.55e-01 100.0% 62.7%
6d92A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.63 49.0 3.40e-01 84.5% 25.8%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.63 46.0 3.86e-01 78.9% 47.2%
4nspA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.62 49.0 3.39e-01 97.2% 26.1%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.62 54.0 3.50e-01 100.0% 31.1%
4yfbC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.61 38.0 3.71e-01 88.7% 57.7%
4hstB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.60 36.0 3.73e-01 91.5% 61.8%
6oziB00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.60 46.0 3.25e-01 94.4% 25.3%
1ir3A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 39.0 3.59e-01 100.0% 50.5%
4aw8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 41.0 3.09e-01 95.8% 28.0%
1xfdA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.57 50.0 3.05e-01 100.0% 23.9%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 47.0 3.99e-01 95.8% 89.1%
2l2mA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 40.0 4.06e-01 88.7% 75.7%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.57 38.0 3.11e-01 80.3% 34.0%
4fczA00 3.10.450.710 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Tgt2/MlaC 0.57 44.0 3.37e-01 87.3% 93.4%
8in8C01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 45.0 3.15e-01 91.5% 92.7%
2g8sB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 49.0 3.15e-01 100.0% 32.6%
1hwyA02 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.56 47.0 3.79e-01 97.2% 75.8%
7f79A01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.56 48.0 3.75e-01 100.0% 69.9%
1ae2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 46.0 4.41e-01 94.4% 90.7%
5n9bA01 2.60.40.2160 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 1 0.55 45.0 3.63e-01 88.7% 62.0%
2qnkA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 44.0 2.98e-01 90.1% 43.0%
4gxbA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 40.0 3.63e-01 80.3% 54.8%
2zgyA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 40.0 3.27e-01 78.9% 94.3%
7zkpA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.55 37.0 2.84e-01 71.8% 38.6%
5aj3E01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.54 41.0 3.99e-01 87.3% 72.8%
3qh4A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 45.0 3.07e-01 100.0% 35.7%
1a7tA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.54 48.0 3.36e-01 100.0% 81.9%
2vzsA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 3.50e-01 77.5% 90.1%
1wuoA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.53 46.0 3.33e-01 100.0% 87.2%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.53 36.0 3.34e-01 80.3% 53.8%
1bvuA01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.53 44.0 3.61e-01 97.2% 76.0%
4dduA07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.53 42.0 3.74e-01 87.3% 61.7%
2i99A01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.53 42.0 3.45e-01 91.5% 54.0%
1a1aB00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 42.0 3.83e-01 90.1% 67.6%
7x4oB01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 43.0 3.78e-01 93.0% 98.2%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.53 40.0 2.98e-01 81.7% 76.2%
7kx7A03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 43.0 3.16e-01 95.8% 34.0%
4gn2A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 41.0 2.93e-01 88.7% 27.1%
6canA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 44.0 2.93e-01 95.8% 81.5%
6t5kC00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 45.0 3.21e-01 100.0% 87.1%
1e5tA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 44.0 2.88e-01 98.6% 73.9%
1cruA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 43.0 2.72e-01 100.0% 30.4%
3pg4A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 44.0 3.12e-01 100.0% 88.3%
4hvtA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 43.0 2.88e-01 100.0% 36.8%
1h6eA02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.50 37.0 3.23e-01 77.5% 93.3%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3596066 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.79 59.0 4.77e-01 83.1% 44.0%
4928464 296.1.1.1 a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › NIR_SIR 0.73 64.0 5.24e-01 100.0% 81.5%
5077400 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.67 47.0 4.16e-01 77.5% 50.0%
4939324 5.1.4.559 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta_propel 0.65 57.0 3.69e-01 100.0% 37.4%
3255424 5.1.3.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.64 57.0 4.35e-01 100.0% 43.6%
3645516 296.1.1.1 a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › NIR_SIR 0.64 47.0 3.90e-01 78.9% 60.8%
3802472 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.64 57.0 3.69e-01 98.6% 26.2%
3784861 220.1.1.74 beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.64 48.0 3.91e-01 81.7% 43.8%
4451022 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 44.0 3.74e-01 80.3% 43.3%
3412668 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.63 53.0 4.55e-01 97.2% 95.0%
4995163 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.63 44.0 3.12e-01 84.5% 22.1%
184719 3514.1.1.1 a+b two layers › uncharacterized protein PA1076 › uncharacterized protein PA1076 › uncharacterized protein PA1076 › DUF5064 0.63 46.0 3.86e-01 78.9% 47.2%
3542147 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.62 50.0 4.08e-01 91.5% 75.7%
3658408 4325.1.1.13 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF4371 0.62 43.0 4.27e-01 73.2% 89.3%
4964487 218.1.1.12 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › PF26684 0.61 53.0 4.65e-01 100.0% 79.1%
3797649 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 43.0 3.74e-01 87.3% 48.2%
3927287 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.61 46.0 4.09e-01 83.1% 58.1%
3247792 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.61 48.0 4.18e-01 91.5% 89.2%
4943448 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 45.0 3.80e-01 80.3% 51.7%
3781935 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.60 50.0 4.24e-01 95.8% 94.4%
3743823 223.2.1.4 a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN 0.60 51.0 3.74e-01 100.0% 42.4%
3741279 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.59 49.0 4.03e-01 95.8% 87.9%
3924083 2484.1.1.204 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 0.59 44.0 3.39e-01 81.7% 38.2%
3251342 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.59 49.0 4.23e-01 97.2% 87.5%
4661118 218.1.1.2 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.59 49.0 4.21e-01 100.0% 71.2%
1954221 2.26.1.1 beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 0.59 49.0 4.90e-01 94.4% 89.3%
3408176 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.59 48.0 4.17e-01 95.8% 95.8%
4252321 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 47.0 4.12e-01 88.7% 86.7%
399504 5.1.3.22 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › GSDH 0.58 49.0 3.23e-01 100.0% 30.8%
4538867 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.57 48.0 3.03e-01 97.2% 66.4%
4946348 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.57 42.0 2.88e-01 81.7% 24.4%
3577911 220.1.1.15 beta barrels › PH domain-like › PH domain-like › PH domain-like › BBL5 0.57 42.0 3.42e-01 81.7% 40.0%
3641990 295.1.1.39 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF4371 0.56 45.0 4.47e-01 97.2% 84.0%
3711707 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.56 45.0 3.70e-01 93.0% 83.4%
3413325 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 48.0 3.07e-01 100.0% 20.0%
3658323 284.1.2.1 a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases › OSR1_C 0.56 40.0 3.64e-01 78.9% 57.1%
3571668 5.1.3.9 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › OLF 0.56 48.0 3.31e-01 100.0% 30.4%
3735671 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.56 42.0 3.86e-01 84.5% 66.0%
3806989 5.1.5.66 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 0.56 47.0 3.21e-01 98.6% 29.8%
3272662 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.55 45.0 3.08e-01 97.2% 61.7%
3439646 284.1.3.2 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C 0.55 39.0 3.56e-01 78.9% 57.1%
3373744 5.1.4.241 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › eIF2A 0.54 44.0 2.73e-01 100.0% 14.5%
3925433 2484.1.1.4 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.54 46.0 3.98e-01 95.8% 63.5%
3393168 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 46.0 4.06e-01 98.6% 64.5%
3671250 2484.1.1.215 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27041 0.54 41.0 3.34e-01 88.7% 41.4%
3873021 5.1.5.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.54 46.0 2.84e-01 100.0% 18.0%
5040453 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 37.0 3.03e-01 70.4% 62.3%
3492348 2.1.1.25 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.54 45.0 3.68e-01 97.2% 51.7%
3352475 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.54 41.0 4.12e-01 88.7% 89.3%
4015435 2.1.1.44 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.53 46.0 4.21e-01 98.6% 80.0%
4880573 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.53 47.0 3.33e-01 100.0% 87.5%
3267746 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.53 40.0 3.82e-01 84.5% 77.6%
4508852 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.52 39.0 3.46e-01 84.5% 73.9%
4929294 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.52 39.0 2.93e-01 100.0% 31.7%
4993562 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 37.0 3.35e-01 77.5% 55.2%
3168414 4099.1.1.46 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF30283 0.52 38.0 3.30e-01 81.7% 68.8%
5035440 244.2.1.1 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Pyr_redox_dim 0.51 45.0 3.68e-01 100.0% 60.7%
5062233 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 40.0 3.53e-01 87.3% 88.6%