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ON453904.1__WAK79812.1__X__00078

Bact-Vir

ON453904.1__WAK79812.1__X__00078

Identity

Accession:
ON453904 ↗
Kingdom:
phage

Quality

80.9 mean pLDDT

Taxonomy

TaxID: 2951976

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-73
PDB
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b3fX02 2.40.30.270 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.66 50.0 4.60e-01 82.2% 91.8%
3zugB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.66 47.0 3.85e-01 76.7% 68.3%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.66 47.0 4.65e-01 76.7% 96.2%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 47.0 4.30e-01 78.1% 98.0%
1cqxA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.63 45.0 4.01e-01 78.1% 95.5%
3cq9A00 3.40.50.10240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin pyrophosphokinase, catalytic domain 0.61 45.0 3.28e-01 79.5% 30.2%
5j09A00 2.60.120.950 Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein 0.59 45.0 3.50e-01 83.6% 100.0%
2d93A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 50.0 4.21e-01 98.6% 69.4%
4d7yA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.59 43.0 3.67e-01 80.8% 93.9%
2bnmA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 43.0 3.73e-01 80.8% 70.8%
3clwC01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 43.0 3.95e-01 80.8% 64.0%
3h8uA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 43.0 3.70e-01 80.8% 65.6%
5j7mA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 44.0 3.77e-01 83.6% 63.1%
1o59A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 48.0 3.77e-01 98.6% 96.6%
6b9tF01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 43.0 3.67e-01 82.2% 72.8%
3kq4B04 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.57 44.0 3.83e-01 82.2% 62.2%
1j3qB00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 42.0 3.23e-01 80.8% 49.2%
4nwvA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 42.0 3.24e-01 80.8% 80.4%
6v55A01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.57 43.0 3.78e-01 82.2% 61.6%
4e2oA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 42.0 3.97e-01 80.8% 70.5%
3unpA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 43.0 3.31e-01 87.7% 85.5%
7nkdA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.56 39.0 3.91e-01 75.3% 74.0%
4i0wD02 2.60.120.1290 Mainly Beta › Sandwich › Jelly Rolls › 0.55 40.0 3.43e-01 80.8% 75.4%
4pbxA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 3.85e-01 82.2% 81.5%
1rj8A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.54 40.0 3.36e-01 82.2% 95.7%
4c91A04 2.60.120.1620 Mainly Beta › Sandwich › Jelly Rolls › 0.54 40.0 3.12e-01 83.6% 81.0%
2hevF00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.54 40.0 3.46e-01 82.2% 89.7%
2q30A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 40.0 3.85e-01 82.2% 88.6%
2w1sA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 39.0 3.35e-01 82.2% 84.2%
3kl0D01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 40.0 3.59e-01 80.8% 66.0%
3fjsC00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 42.0 3.73e-01 84.9% 85.0%
5u55A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 39.0 3.43e-01 80.8% 69.7%
2f4pA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 40.0 3.38e-01 82.2% 57.5%
1h6eA02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.53 40.0 3.61e-01 82.2% 71.4%
1wfuA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.58e-01 78.1% 82.1%
4yhbA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 41.0 3.53e-01 89.0% 98.4%
3r8qA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 3.76e-01 82.2% 82.2%
3efoB03 2.60.40.1670 Mainly Beta › Sandwich › Immunoglobulin-like › beta-sandwich domain of Sec23/24 0.53 39.0 3.27e-01 80.8% 61.3%
2q7nA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 3.66e-01 82.2% 79.6%
4wtxA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.56e-01 79.5% 81.4%
4xg1A01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.53 39.0 3.10e-01 83.6% 52.3%
3skvA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 38.0 3.13e-01 80.8% 54.5%
5eiqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 3.68e-01 82.2% 81.3%
2ztbA02 2.60.40.4280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 38.0 3.51e-01 79.5% 84.8%
2w9xB01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 38.0 3.52e-01 80.8% 96.0%
1fnfA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.61e-01 79.5% 83.1%
1a21A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.50e-01 79.5% 74.5%
4a2lB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.30e-01 80.8% 80.5%
4n2cA02 2.60.40.1700 Mainly Beta › Sandwich › Immunoglobulin-like › Protein-arginine deiminase, central domain 0.52 41.0 3.24e-01 91.8% 56.1%
5f29B00 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.51 37.0 3.73e-01 82.2% 80.3%
2kxtA01 2.60.60.30 Mainly Beta › Sandwich › Lipoxygenase-1 › sav2460 like domains 0.51 35.0 2.76e-01 71.2% 78.6%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.75e-01 82.2% 83.5%
4gpvA01 2.60.40.2580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 35.0 2.93e-01 74.0% 69.3%
2esvD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.31e-01 79.5% 79.8%
4d0qA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 38.0 3.04e-01 83.6% 93.8%
3r8qA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 36.0 3.46e-01 78.1% 84.3%
6udkD00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 37.0 3.11e-01 79.5% 80.0%
6hyfA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 43.0 3.87e-01 100.0% 82.1%
2wmpB00 2.60.40.1090 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain 0.50 37.0 3.16e-01 79.5% 99.2%
5ddtA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.50 39.0 2.83e-01 87.7% 79.7%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3273490 1.1.7.46 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B 0.64 51.0 4.39e-01 89.0% 99.2%
4012802 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 47.0 4.14e-01 82.2% 94.5%
5026011 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 46.0 4.68e-01 82.2% 100.0%
4627066 1.1.7.44 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Dna2_Rift 0.61 50.0 4.38e-01 93.2% 94.8%
5013970 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 51.0 3.97e-01 100.0% 97.7%
3879285 10.4.1.23 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CDCP1_CUB_6 0.59 45.0 3.86e-01 82.2% 55.8%
1145546 10.34.1.1 beta sandwiches › jelly-roll › Protein CLP1 jelly-roll domain › Protein CLP1 jelly-roll domain › CLP1_N 0.58 43.0 4.17e-01 80.8% 82.4%
3521963 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.57 41.0 3.66e-01 78.1% 95.5%
4019920 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 45.0 3.88e-01 91.8% 92.8%
3485793 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.56 43.0 3.41e-01 82.2% 75.3%
3903710 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.56 43.0 3.74e-01 83.6% 63.5%
4581989 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 40.0 3.57e-01 78.1% 93.6%
3282870 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.55 41.0 3.35e-01 80.8% 40.7%
4434795 10.32.1.30 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › NPCBM 0.55 41.0 3.34e-01 79.5% 77.2%
1248331 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.55 44.0 4.01e-01 86.3% 99.0%
3886025 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.55 40.0 3.82e-01 79.5% 80.0%
3427374 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 43.0 3.69e-01 87.7% 88.8%
4598654 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.55 41.0 3.82e-01 82.2% 72.6%
3342496 207.1.1.119 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_13 0.54 48.0 2.89e-01 100.0% 27.3%
5027796 10.2.1.75 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CBM96 0.54 40.0 3.13e-01 82.2% 100.0%
3913258 10.3.1.2 beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q 0.54 39.0 3.30e-01 80.8% 95.0%
3398159 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.53 41.0 3.39e-01 83.6% 85.9%
2721220 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.53 39.0 3.59e-01 80.8% 78.0%
4563187 11.1.1.124 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glucodextran_B 0.53 38.0 3.67e-01 76.7% 80.0%
3719749 11.1.1.882 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TPPC8_C 0.53 38.0 3.27e-01 76.7% 86.7%
3428828 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.52 36.0 3.22e-01 75.3% 100.0%
3897016 11.1.1.463 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_C17orf99 0.52 37.0 3.55e-01 78.1% 85.6%
3892776 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.52 38.0 3.38e-01 82.2% 69.6%
3223748 10.32.1.21 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PAW 0.51 39.0 3.10e-01 86.3% 42.4%
4981931 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 37.0 3.19e-01 76.7% 70.8%
3279215 10.12.1.29 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › CDO_I 0.51 43.0 3.47e-01 98.6% 75.5%
3480708 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.51 37.0 3.18e-01 80.8% 58.5%
4014414 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.50 35.0 2.78e-01 72.6% 60.0%
3301465 12.5.1.14 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › DUF1191 0.50 38.0 3.04e-01 87.7% 49.1%
398894 11.1.5.15 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PapG_C 0.50 37.0 3.16e-01 79.5% 99.2%
3496965 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 38.0 3.22e-01 84.9% 93.3%
D2 medium residues 77-97_109-133
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ft8E00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 34.0 3.54e-01 84.8% 56.8%
1sseB00 1.10.238.100 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › YAP1 redox domain. Chain B 0.54 40.0 3.39e-01 95.7% 44.2%
2b2nB01 3.40.50.11180 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 44.0 2.87e-01 100.0% 20.7%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3988605 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 41.0 3.47e-01 100.0% 43.8%
3425800 5073.1.3.3 alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Potassium-transporting ATPase subunit KdpB transmembrane domain › PhoLip_ATPase_N 0.53 42.0 2.85e-01 100.0% 27.3%