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ON453904.1__WAK79829.1__X__00095

Bact-Vir

ON453904.1__WAK79829.1__X__00095

Identity

Accession:
ON453904 ↗
Kingdom:
phage

Quality

90.3 mean pLDDT

Taxonomy

TaxID: 2951976

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-192
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09992.15 best NAGPA 41.1 3.20e-10 83.2% 99.4%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fyhB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 28.0 3.60e-01 75.8% 91.3%
1y6kR01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 27.0 3.43e-01 88.4% 88.2%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3958897 4187.2.1.0 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.72 45.0 5.71e-01 83.7% 100.0%
3396683 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.62 27.0 4.05e-01 97.4% 96.2%
3949704 881.1.1.15 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3558 0.55 28.0 3.21e-01 81.6% 63.8%
3583600 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.52 23.0 3.33e-01 97.4% 93.8%
4955225 210.1.3.3 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.51 40.0 3.65e-01 81.6% 98.4%
3757701 382.1.1.3 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Activin_recp 0.51 22.0 3.25e-01 97.4% 92.5%
3739303 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.51 30.0 3.64e-01 83.7% 90.8%
3852196 382.1.1.2 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_TOLIP 0.50 21.0 3.04e-01 98.4% 83.0%
3553704 382.1.1.1 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.50 24.0 3.33e-01 98.4% 93.3%
D2 high residues 212-391
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01520.24 best Amidase_3 139.6 1.60e-40 98.3% 99.4%
D3 medium residues 403-442
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.71 47.0 3.38e-01 70.0% 26.3%
2jroA01 3.30.1910.10 Alpha Beta › 2-Layer Sandwich › so0334 like fold › so0334 like domain 0.67 38.0 3.19e-01 97.5% 30.8%
1mumA00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.60 46.0 2.78e-01 85.0% 50.2%
2gtaA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.52 40.0 3.04e-01 85.0% 35.1%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3220675 387.1.1.68 few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › PF28768 0.55 33.0 3.24e-01 100.0% 54.5%