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ON456151.1__URQ02838.1__X__00050

Bact-Vir

ON456151.1__URQ02838.1__X__00050

Identity

Accession:
ON456151 ↗
Kingdom:
phage

Quality

83.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Aquingentivirus› Listeria_phage_HB17054

TaxID: 2942418

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-56
PDB
Domain cluster: rep: IMGVR_UViG_3300028602_000223-3300028602-Ga0265294_1000762521__D6-47
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1g5hA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.73 56.0 3.43e-01 82.4% 23.2%
1a1xA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.69 47.0 3.71e-01 74.5% 34.0%
4x00A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.66 45.0 2.78e-01 70.6% 24.2%
4dy0B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.61 45.0 3.40e-01 80.4% 41.4%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 43.0 4.00e-01 74.5% 88.9%
7qi3A01 3.30.2140.20 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › 0.60 46.0 2.94e-01 92.2% 36.9%
1kw3B02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 45.0 3.23e-01 82.4% 33.1%
3bhcA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.60 40.0 3.11e-01 70.6% 41.5%
1gccA00 3.30.730.10 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain 0.60 41.0 3.91e-01 100.0% 60.3%
2uvaG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.60 49.0 3.73e-01 98.0% 81.6%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 49.0 4.69e-01 100.0% 82.3%
4g79A00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.58 48.0 3.65e-01 96.1% 79.1%
3iveA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.58 40.0 2.54e-01 74.5% 91.5%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 38.0 2.72e-01 92.2% 20.9%
2h6oA02 2.60.40.2810 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 44.0 3.25e-01 88.2% 88.4%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.58 47.0 3.57e-01 92.2% 40.7%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 47.0 4.12e-01 100.0% 60.2%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 45.0 4.22e-01 100.0% 72.3%
4a7kA03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 45.0 3.32e-01 98.0% 93.0%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.54 45.0 3.78e-01 100.0% 58.8%
4n6tA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 43.0 3.77e-01 90.2% 60.8%
3qdfA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.54 42.0 4.12e-01 100.0% 84.5%
2fj0A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 37.0 2.15e-01 72.5% 10.4%
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 46.0 3.44e-01 98.0% 87.4%
2d4oA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 39.0 3.16e-01 90.2% 50.4%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.53 43.0 3.73e-01 92.2% 64.2%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 43.0 4.16e-01 100.0% 83.3%
3e9eB00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.53 44.0 2.90e-01 96.1% 97.5%
1b69A00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.52 37.0 3.46e-01 90.2% 58.0%
2v5nA02 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.52 40.0 3.17e-01 94.1% 100.0%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 38.0 3.25e-01 82.4% 67.0%
8ciwA02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.52 37.0 2.88e-01 80.4% 59.4%
7esdB01 2.60.40.350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 37.0 3.11e-01 78.4% 92.4%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 35.0 3.38e-01 94.1% 60.3%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 43.0 3.98e-01 100.0% 79.4%
4ckbD03 2.40.50.830 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 39.0 3.00e-01 90.2% 42.5%
3uimA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 41.0 3.43e-01 90.2% 74.2%
2rm4A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 42.0 3.98e-01 100.0% 80.3%
1y7bA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 42.0 2.65e-01 100.0% 34.5%
3dghA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 41.0 3.28e-01 100.0% 95.1%
1e5pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 35.0 2.68e-01 76.5% 93.3%
3f2bA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 35.0 2.98e-01 76.5% 42.7%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3313861 4325.1.1.10 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF659 0.79 55.0 5.36e-01 76.5% 67.3%
3710324 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.71 52.0 4.06e-01 78.4% 54.5%
4930369 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.70 49.0 3.70e-01 74.5% 35.8%
5034195 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.69 50.0 4.89e-01 76.5% 70.9%
4345080 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.66 46.0 4.30e-01 74.5% 86.2%
4009814 252.2.1.5 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 0.66 44.0 4.14e-01 74.5% 55.4%
3760297 211.1.1.37 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Teneurin_ABD 0.65 48.0 3.62e-01 78.4% 49.2%
3527512 220.1.1.32 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind 0.65 57.0 4.09e-01 98.0% 75.7%
2796079 3335.1.1.1 ↗ beta barrels › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › TbpB_C 0.64 49.0 4.20e-01 84.3% 87.8%
4018808 719.1.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.63 53.0 4.07e-01 96.1% 93.3%
5038690 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.63 53.0 3.75e-01 96.1% 76.2%
4960051 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.62 44.0 3.10e-01 76.5% 55.7%
3287567 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.62 55.0 4.57e-01 100.0% 57.8%
3898844 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.62 53.0 3.58e-01 98.0% 34.5%
1954221 2.26.1.1 ↗ beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 0.61 43.0 3.89e-01 76.5% 57.3%
5014317 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 47.0 4.17e-01 88.2% 80.0%
3802911 7579.1.1.92 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1, Abhydrolase_6 0.61 45.0 2.80e-01 82.4% 23.9%
3233732 207.1.1.52 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.61 42.0 2.82e-01 92.2% 17.7%
3994778 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 49.0 3.71e-01 96.1% 65.5%
3931349 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.60 52.0 3.84e-01 100.0% 59.0%
3419793 5.1.10.3 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › DUF295 0.60 46.0 3.36e-01 94.1% 31.1%
3944564 3735.1.1.14 ↗ beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell 0.59 39.0 2.15e-01 90.2% 4.1%
5054267 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 50.0 3.20e-01 100.0% 20.0%
4965148 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 46.0 3.71e-01 88.2% 88.6%
4019005 10.12.1.30 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 3-HAO 0.59 41.0 3.36e-01 72.5% 55.8%
3995290 4.1.1.332 ↗ beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 0.59 47.0 3.75e-01 92.2% 72.7%
3169943 719.1.1.7 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF30203 0.58 48.0 3.59e-01 96.1% 95.2%
3594736 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 50.0 2.83e-01 100.0% 12.9%
3788120 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 50.0 3.05e-01 100.0% 21.8%
3836830 7579.1.1.44 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 0.57 44.0 2.73e-01 86.3% 24.9%
3995389 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.57 48.0 3.54e-01 98.0% 71.7%
4220126 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.56 43.0 3.87e-01 100.0% 56.5%
3371393 4266.2.1.1 ↗ alpha bundles › Hyaluronidase domain-like › TTHA0068-like › TTHA0068-like › DUF309 0.56 47.0 3.27e-01 96.1% 65.7%
3232550 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 38.0 3.24e-01 72.5% 49.4%
3714509 220.1.1.303 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26278 0.55 49.0 3.50e-01 100.0% 61.3%
3454914 243.3.1.12 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SQAPI 0.55 47.0 3.83e-01 98.0% 52.0%
3439646 284.1.3.2 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C 0.55 39.0 3.14e-01 76.5% 66.7%
3600626 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 43.0 3.47e-01 88.2% 48.0%
3973870 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 42.0 2.83e-01 96.1% 72.9%
3220024 207.1.1.52 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.53 42.0 2.73e-01 90.2% 18.9%
3601966 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.53 41.0 3.20e-01 94.1% 37.4%
4253165 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.52 42.0 3.18e-01 94.1% 41.4%
3491784 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.52 45.0 3.40e-01 98.0% 89.6%
3695979 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.52 45.0 3.49e-01 100.0% 45.3%
396031 4.22.1.1 ↗ beta barrels › SH3 › Hypothetical protein ORF131 › Hypothetical protein ORF131 › PSV_ORF131-like_dom 0.51 37.0 3.11e-01 82.4% 60.4%
4938828 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 39.0 3.83e-01 100.0% 78.3%
4943922 2005.1.1.122 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF_alpha 0.50 43.0 2.89e-01 100.0% 64.3%