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ON456334.1__UTN91538.1__SEA_PERIWINKLE_84__00084

Bact-Vir

ON456334.1__UTN91538.1__SEA_PERIWINKLE_84__00084

Identity

Accession:
ON456334 ↗
Kingdom:
phage

Quality

87.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-49
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.76 54.0 4.44e-01 77.5% 53.3%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.70 57.0 4.85e-01 100.0% 82.7%
4huzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.69 51.0 3.47e-01 82.5% 33.1%
7ejoB01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.69 48.0 3.81e-01 72.5% 89.2%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.68 46.0 3.50e-01 70.0% 82.0%
2e4mC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.66 53.0 3.66e-01 92.5% 51.0%
1xm8A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.66 54.0 3.35e-01 100.0% 31.9%
3rlfF03 2.40.430.10 Mainly Beta › Beta Barrel › Periplasmic binding protein-like II › D-maltodextrin-binding protein, MBP 0.66 51.0 4.13e-01 92.5% 80.7%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.66 53.0 3.67e-01 90.0% 44.4%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 43.0 3.78e-01 77.5% 43.1%
1h8mA00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.65 50.0 3.66e-01 100.0% 34.3%
4kktA01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.64 44.0 3.42e-01 72.5% 42.7%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.64 47.0 3.24e-01 82.5% 53.5%
3clqA02 3.90.1710.10 Alpha Beta › Alpha-Beta Complex › Enterococcus faecalis V583 fold › Enterococcus faecalis V583 domain 0.64 51.0 3.56e-01 100.0% 94.3%
3gceA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.64 47.0 3.52e-01 82.5% 55.8%
1bbuA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 48.0 3.32e-01 85.0% 35.0%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.63 47.0 3.46e-01 85.0% 32.5%
2hf6A00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.63 49.0 3.49e-01 100.0% 32.2%
4p78C00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.62 51.0 4.42e-01 97.5% 66.7%
2vszB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 48.0 3.47e-01 85.0% 40.2%
1kaxA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.62 42.0 3.96e-01 80.0% 54.5%
1dz1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 42.0 3.68e-01 77.5% 47.1%
2bm0A03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.61 44.0 4.13e-01 80.0% 96.1%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 44.0 3.96e-01 82.5% 65.6%
1wydA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 41.0 3.20e-01 75.0% 59.8%
6l3tA01 1.20.1440.80 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain 0.60 42.0 2.69e-01 75.0% 57.3%
1tk7A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.60 42.0 4.31e-01 92.5% 83.8%
3fgxA00 3.30.2220.10 Alpha Beta › 2-Layer Sandwich › rbstp2171 › rbstp2171 0.59 45.0 3.56e-01 90.0% 71.9%
1xhhA00 2.60.40.1900 Mainly Beta › Sandwich › Immunoglobulin-like › Beta-microseminoprotein (PSP94) domain 0.59 41.0 3.22e-01 75.0% 72.5%
1di2A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 45.0 4.07e-01 100.0% 71.0%
2hhiA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.59 45.0 3.47e-01 100.0% 39.8%
1l0wA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 40.0 3.09e-01 75.0% 62.3%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 44.0 3.64e-01 100.0% 47.4%
1neiA00 3.30.160.220 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YoaG 0.58 41.0 3.87e-01 87.5% 83.3%
1v1pB02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 42.0 3.61e-01 85.0% 60.8%
4p6zM01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 45.0 3.43e-01 100.0% 33.9%
2z0qA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 43.0 3.09e-01 85.0% 31.2%
3nemA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 39.0 3.03e-01 75.0% 61.0%
2lcjA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.56 40.0 2.72e-01 80.0% 88.6%
1nyeA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.56 43.0 3.12e-01 97.5% 34.3%
2w20A02 2.40.220.10 Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3 0.55 42.0 3.62e-01 97.5% 81.2%
1nrkA01 3.30.70.1630 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 45.0 3.53e-01 97.5% 55.7%
2im9A02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.55 44.0 3.11e-01 100.0% 81.0%
2ivdB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 37.0 2.64e-01 77.5% 94.5%
3lxuX01 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.53 42.0 2.56e-01 97.5% 24.9%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.53 42.0 3.22e-01 100.0% 34.2%
1e8cA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.53 38.0 2.59e-01 100.0% 19.3%
1ilyA00 3.30.420.100 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.52 38.0 3.26e-01 97.5% 91.1%
2jhnA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.52 37.0 2.96e-01 90.0% 38.1%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.52 40.0 3.79e-01 97.5% 80.0%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.52 38.0 3.06e-01 90.0% 60.0%
1yuaA02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.51 37.0 3.38e-01 80.0% 81.0%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.51 38.0 3.12e-01 100.0% 42.3%
4m9fA00 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.50 42.0 2.78e-01 87.5% 67.0%
2wj9B00 3.30.70.3580 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Antirestriction protein 0.50 38.0 2.78e-01 95.0% 62.1%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3242245 719.1.1.0 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.79 55.0 4.72e-01 75.0% 46.2%
3924524 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.77 54.0 4.50e-01 77.5% 42.9%
3480321 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 55.0 4.45e-01 77.5% 66.2%
3650304 66.1.1.0 beta sandwiches › ISP domain › ISP domain › ISP domain 0.77 52.0 4.56e-01 72.5% 48.3%
5051613 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.74 60.0 4.44e-01 100.0% 41.5%
3704395 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 52.0 4.47e-01 77.5% 48.4%
3713334 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.73 52.0 4.56e-01 77.5% 51.7%
3281618 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.71 48.0 3.67e-01 72.5% 29.0%
3656396 219.1.1.16 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 0.71 48.0 3.16e-01 70.0% 17.6%
4481026 4.1.1.407 beta barrels › SH3 › SH3 › SH3 › PF29661 0.71 48.0 4.30e-01 72.5% 48.3%
3536326 1073.1.1.0 alpha arrays › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) 0.71 56.0 4.46e-01 95.0% 51.1%
3319421 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.68 48.0 4.51e-01 75.0% 58.0%
3671668 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.68 55.0 3.55e-01 92.5% 56.2%
3996724 219.1.1.16 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 0.68 45.0 2.95e-01 70.0% 14.7%
3882038 223.2.1.3 a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.67 54.0 3.77e-01 100.0% 30.3%
3364335 223.2.1.3 a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.67 54.0 3.71e-01 100.0% 28.5%
3886048 223.2.1.3 a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.67 54.0 3.76e-01 100.0% 30.5%
3317787 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 48.0 4.53e-01 77.5% 60.0%
5049789 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 53.0 3.93e-01 100.0% 37.6%
3716107 2484.2.1.0 mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain 0.67 54.0 4.79e-01 100.0% 63.6%
3510695 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.66 51.0 4.38e-01 100.0% 57.5%
3673032 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 48.0 4.05e-01 82.5% 48.6%
4932470 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.64 44.0 3.47e-01 72.5% 72.2%
3884178 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.64 48.0 4.13e-01 90.0% 62.7%
3979711 252.2.1.6 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_2 0.64 47.0 4.07e-01 82.5% 86.2%
4565130 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 46.0 3.59e-01 80.0% 33.7%
4978284 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 49.0 3.74e-01 100.0% 40.0%
3646226 375.1.1.31 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.63 43.0 3.56e-01 72.5% 43.8%
3460576 109.3.1.162 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.63 43.0 2.66e-01 72.5% 16.2%
3926267 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 47.0 3.26e-01 90.0% 66.3%
3260369 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.62 44.0 4.30e-01 77.5% 66.7%
3495619 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.62 42.0 3.21e-01 75.0% 27.3%
3941210 101.1.1.76 alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.61 44.0 3.44e-01 80.0% 57.9%
4978622 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 50.0 3.89e-01 100.0% 51.0%
4115593 2002.1.1.30 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.60 40.0 2.40e-01 70.0% 9.5%
2327295 6041.1.1.0 a+b two layers › DUF1107-like › DUF1107-like › DUF1107-like 0.60 48.0 3.80e-01 100.0% 64.4%
5051623 223.2.1.20 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 0.59 46.0 3.41e-01 100.0% 31.5%
3374173 206.1.1.70 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.59 41.0 2.52e-01 77.5% 25.5%
4973804 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 44.0 3.76e-01 90.0% 64.0%
4944397 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 45.0 4.27e-01 90.0% 76.0%
3596185 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.58 41.0 2.53e-01 77.5% 27.4%
4966836 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 39.0 3.65e-01 72.5% 52.7%
4030539 314.1.1.12 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.57 41.0 2.47e-01 75.0% 22.4%
4487975 330.10.1.1 a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO 0.57 44.0 3.38e-01 87.5% 79.0%
3164102 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.57 43.0 4.28e-01 100.0% 91.1%
4374423 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.56 39.0 2.78e-01 75.0% 44.4%
2575628 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.56 45.0 3.25e-01 97.5% 30.1%
4026302 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.56 47.0 3.24e-01 100.0% 60.0%
5000498 896.1.1.1 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e 0.55 39.0 3.46e-01 77.5% 50.0%
3936327 101.1.1.76 alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.55 41.0 3.22e-01 85.0% 55.0%
3593875 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 39.0 3.55e-01 70.0% 61.8%
1945733 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.54 43.0 3.04e-01 95.0% 85.1%
5022351 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.54 34.0 2.19e-01 100.0% 12.8%
5030311 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 39.0 3.67e-01 87.5% 90.9%
4093535 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 39.0 2.95e-01 100.0% 31.5%
5050494 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.51 41.0 3.00e-01 97.5% 36.9%
3590189 4967.1.1.0 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.51 35.0 2.50e-01 75.0% 45.6%
4061485 4967.1.1.0 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.51 42.0 2.82e-01 97.5% 47.4%