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ON456347.1__UTN92930.1__SEA_FINKLE_11__00011

Bact-Vir

ON456347.1__UTN92930.1__SEA_FINKLE_11__00011

Identity

Accession:
ON456347 ↗
Kingdom:
phage

Quality

67.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Finkelvirus› Gordonia_phage_Finkle

TaxID: 2926099

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-49
PDB
Domain cluster: rep: JN116824.1__AEV51976.1__X__00040__D2-44
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4y6iA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 60.0 4.74e-01 100.0% 76.7%
3tj8A02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.69 58.0 5.16e-01 100.0% 73.0%
5aj3F00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.68 57.0 4.38e-01 100.0% 74.0%
6rawN02 3.40.5.60 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.64 51.0 5.04e-01 100.0% 85.5%
3dhuA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 45.0 4.02e-01 89.6% 50.7%
2x3lB03 3.90.105.10 Alpha Beta › Alpha-Beta Complex › Molybdopterin biosynthesis moea protein, domain 2 › Molybdopterin biosynthesis moea protein, domain 2 0.63 44.0 4.15e-01 100.0% 61.0%
1h3dA03 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 53.0 4.83e-01 100.0% 82.1%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.62 45.0 3.43e-01 81.2% 75.8%
2e9xB01 3.40.5.50 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.61 51.0 4.65e-01 100.0% 69.7%
3anwA02 3.40.5.50 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.61 49.0 4.76e-01 100.0% 81.0%
3qjlA02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 48.0 3.84e-01 100.0% 96.6%
1vb5B02 3.40.50.10470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor eif-2b; domain 2 0.59 43.0 2.87e-01 77.1% 34.8%
4f87B00 3.30.720.190 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.58 36.0 3.42e-01 100.0% 46.8%
3q1nA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.58 44.0 2.79e-01 89.6% 77.6%
6zzmA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.58 43.0 2.98e-01 93.8% 86.8%
3jr1A02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.56 44.0 3.05e-01 91.7% 69.5%
4p78C00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.55 45.0 4.21e-01 100.0% 100.0%
1vq8D00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.55 43.0 3.32e-01 100.0% 61.4%
3c0bA02 3.30.420.190 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › conserved archaeal protein q6m145 0.55 45.0 2.99e-01 95.8% 95.5%
2atzA00 3.90.920.20 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like 0.55 42.0 3.09e-01 100.0% 41.5%
1bzoA00 2.60.40.200 Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain 0.54 43.0 3.15e-01 93.8% 77.5%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.54 42.0 3.55e-01 87.5% 92.7%
5cm2Z00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 39.0 2.74e-01 83.3% 49.5%
5zceA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 35.0 3.14e-01 70.8% 67.5%
3liuA01 2.60.40.3160 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 39.0 3.17e-01 91.7% 95.8%
4m0xA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.51 38.0 2.52e-01 85.4% 36.2%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4940122 304.5.1.3 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.69 59.0 4.73e-01 100.0% 79.8%
4981952 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.69 55.0 5.47e-01 100.0% 88.0%
5066664 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.68 51.0 5.26e-01 97.9% 91.1%
4967982 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.68 55.0 5.66e-01 100.0% 100.0%
4358525 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.67 52.0 5.20e-01 100.0% 86.0%
4057802 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.67 51.0 5.25e-01 97.9% 93.3%
4939553 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.67 52.0 5.23e-01 100.0% 86.0%
1346119 4076.4.1.1 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C 0.66 52.0 5.17e-01 100.0% 86.3%
4927873 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.66 51.0 4.86e-01 100.0% 71.7%
4932061 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.66 52.0 5.29e-01 97.9% 95.6%
4934987 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.66 49.0 5.01e-01 97.9% 88.9%
4169249 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.66 53.0 5.35e-01 100.0% 91.7%
5000438 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.66 52.0 4.70e-01 100.0% 62.9%
4641420 4076.4.1.1 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C 0.66 52.0 4.34e-01 100.0% 48.9%
4514947 1032.1.1.0 ↗ alpha arrays › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain 0.66 51.0 2.77e-01 91.7% 7.5%
4983060 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.66 51.0 4.43e-01 100.0% 53.8%
4460255 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.66 52.0 5.15e-01 100.0% 86.0%
5036149 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.66 50.0 5.14e-01 100.0% 93.3%
4944185 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.65 51.0 4.75e-01 100.0% 67.7%
3973395 304.163.1.0 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.65 53.0 5.06e-01 100.0% 91.7%
4083057 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.65 51.0 5.07e-01 100.0% 86.0%
4973337 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.65 54.0 5.24e-01 100.0% 83.6%
5055750 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.65 53.0 5.33e-01 100.0% 92.0%
5028408 4076.3.1.5 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.65 55.0 5.47e-01 100.0% 94.0%
4230268 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.65 50.0 5.10e-01 97.9% 95.6%
5069341 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.64 53.0 5.33e-01 100.0% 92.0%
4993371 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.64 51.0 5.07e-01 100.0% 88.0%
4536596 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.64 51.0 5.13e-01 100.0% 91.7%
4933005 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.64 52.0 4.94e-01 100.0% 76.7%
4935547 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.64 52.0 5.16e-01 100.0% 92.0%
5015232 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.64 50.0 4.85e-01 100.0% 80.0%
4185829 3253.1.1.0 ↗ a+b two layers › ferredoxin-like domain in flagellar biosynthesis protein flhA › ferredoxin-like domain in flagellar biosynthesis protein flhA › ferredoxin-like domain in flagellar biosynthesis protein flhA 0.64 55.0 5.44e-01 100.0% 96.0%
4081421 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.63 51.0 5.11e-01 100.0% 92.0%
5045981 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.63 52.0 5.17e-01 100.0% 90.6%
5024995 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.63 50.0 4.89e-01 100.0% 84.9%
4936600 304.51.1.1 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C 0.63 51.0 4.00e-01 100.0% 96.7%
4976498 4076.3.1.5 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.63 53.0 5.01e-01 100.0% 83.3%
4280403 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.63 48.0 4.96e-01 97.9% 93.3%
4932084 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.63 51.0 5.08e-01 100.0% 92.0%
5010676 4076.4.1.1 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C 0.63 47.0 4.70e-01 100.0% 88.0%
5019734 4076.3.1.5 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.62 50.0 5.02e-01 100.0% 90.0%
4994655 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.62 52.0 5.16e-01 100.0% 94.0%
4946969 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.62 51.0 5.10e-01 100.0% 94.0%
4991671 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.62 50.0 4.96e-01 100.0% 94.0%
4958467 304.163.1.0 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.61 50.0 4.78e-01 100.0% 90.0%
4939413 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.61 52.0 5.16e-01 100.0% 96.0%
3977819 304.147.1.0 ↗ a+b two layers › Alpha-beta plaits › Tetrahydrodipicolinate acetyltransferase N-terminal domain › Tetrahydrodipicolinate acetyltransferase N-terminal domain 0.61 50.0 4.75e-01 100.0% 86.7%
3742088 4076.3.1.3 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › SLD5_C 0.59 47.0 4.59e-01 100.0% 85.2%
5025566 304.7.1.0 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.58 46.0 4.52e-01 100.0% 92.7%
5038458 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.57 46.0 4.63e-01 95.8% 92.0%
5015831 2008.1.1.107 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.55 38.0 2.95e-01 79.2% 63.0%
7175 862.1.1.2 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DUF1882 0.55 42.0 3.09e-01 100.0% 41.5%
5038842 3987.1.1.0 ↗ a+b complex topology › Type III R-M system modification subunit target recognition domain › Type III R-M system modification subunit target recognition domain › Type III R-M system modification subunit target recognition domain 0.51 40.0 3.00e-01 87.5% 72.5%