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ON456347.1__UTN92970.1__SEA_FINKLE_56__00056

Bact-Vir

ON456347.1__UTN92970.1__SEA_FINKLE_56__00056

Identity

Accession:
ON456347 ↗
Kingdom:
phage

Quality

59.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-73
PDB
D2 high residues 100-160
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1usmA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.68 53.0 4.90e-01 100.0% 67.5%
4wxaA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.65 49.0 4.39e-01 86.9% 58.3%
3oreA01 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.65 48.0 4.75e-01 82.0% 74.2%
4e9jA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.64 48.0 4.66e-01 82.0% 73.9%
3tmaA01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.63 42.0 3.18e-01 80.3% 27.1%
2kwaA00 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.63 50.0 4.28e-01 95.1% 53.5%
2phcB01 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.61 48.0 4.38e-01 95.1% 63.9%
2dm7A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 45.0 4.02e-01 96.7% 58.0%
3onqA02 3.30.70.2730 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 42.0 3.95e-01 82.0% 59.3%
3fvcA02 1.20.5.1890 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.59 44.0 3.76e-01 80.3% 97.0%
1fcdC01 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.59 40.0 3.77e-01 70.5% 83.3%
4lowA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.58 47.0 4.35e-01 100.0% 67.9%
1dcoA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.58 49.0 4.22e-01 100.0% 59.6%
1xkpB00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.58 45.0 3.70e-01 88.5% 47.9%
6qwtA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.57 43.0 3.39e-01 83.6% 41.1%
1ra6A02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.57 41.0 3.61e-01 82.0% 56.6%
1e6vC00 3.90.320.20 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › Methyl-coenzyme M reductase, gamma subunit 0.56 49.0 3.28e-01 100.0% 38.3%
2k1mA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 3.85e-01 100.0% 56.8%
5unaD00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 48.0 3.38e-01 100.0% 35.2%
3kp0A03 3.30.30.60 Alpha Beta › 2-Layer Sandwich › Defensin A-like › D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain 0.56 42.0 4.15e-01 91.8% 77.6%
4q5eA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 46.0 4.40e-01 98.4% 88.0%
6ruiB05 3.90.1070.20 Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › 0.55 47.0 4.21e-01 100.0% 94.6%
1q8iA04 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.55 45.0 3.16e-01 91.8% 31.6%
3bc9A01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 44.0 3.87e-01 100.0% 59.1%
4fqdA01 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.55 46.0 3.26e-01 100.0% 58.3%
1f00I03 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.55 39.0 3.43e-01 78.7% 100.0%
2y3mB01 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.54 39.0 3.68e-01 83.6% 62.3%
3akjA01 3.30.200.120 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.54 39.0 3.77e-01 80.3% 67.6%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 48.0 4.32e-01 100.0% 77.4%
1xdxA01 3.30.1140.40 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 0.53 45.0 3.86e-01 98.4% 97.0%
2r15A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.44e-01 100.0% 48.6%
2jfkC01 3.30.70.3290 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 40.0 3.50e-01 85.2% 86.8%
2g84A01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.51 39.0 2.98e-01 98.4% 32.4%
4bpe700 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 43.0 3.73e-01 100.0% 60.4%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3781365 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.73 59.0 5.56e-01 100.0% 73.3%
5077501 3715.1.1.0 a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e 0.72 50.0 4.46e-01 78.7% 51.8%
4971598 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.72 54.0 5.07e-01 86.9% 65.3%
4988647 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.72 54.0 5.03e-01 86.9% 65.3%
3231349 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.71 53.0 4.60e-01 85.2% 53.3%
4025476 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.70 51.0 4.77e-01 83.6% 62.7%
3580185 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.69 52.0 4.54e-01 86.9% 54.4%
3203106 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.69 58.0 3.81e-01 100.0% 22.7%
3962778 304.31.1.1 a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase › HMG-CoA_red 0.69 53.0 4.17e-01 83.6% 46.4%
3865044 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.68 51.0 4.52e-01 86.9% 55.7%
4945658 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.68 51.0 4.61e-01 86.9% 59.0%
4945702 304.17.1.3 a+b two layers › Alpha-beta plaits › N-utilization substance G protein NusG, N-terminal domain › N-utilization substance G protein NusG, N-terminal domain › KOW 0.67 50.0 4.47e-01 80.3% 57.6%
4937732 305.2.1.1 a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin_4a 0.67 54.0 4.79e-01 100.0% 61.1%
3389472 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.66 50.0 4.55e-01 86.9% 61.3%
4163010 305.2.1.1 a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin_4a 0.66 54.0 4.67e-01 98.4% 57.9%
3742389 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.66 50.0 4.59e-01 86.9% 62.5%
4933299 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.66 48.0 4.31e-01 83.6% 56.6%
3488179 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.66 49.0 4.34e-01 85.2% 54.4%
3313948 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.66 48.0 4.42e-01 85.2% 60.0%
1513105 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.65 49.0 4.45e-01 86.9% 59.8%
4927268 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.65 48.0 4.39e-01 85.2% 60.0%
5030527 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.65 48.0 4.42e-01 86.9% 61.3%
3953697 305.2.1.1 a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin_4a 0.64 53.0 4.61e-01 98.4% 58.9%
3552384 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.64 48.0 4.26e-01 86.9% 55.7%
4975956 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.64 47.0 4.30e-01 86.9% 57.6%
4152393 305.2.1.1 a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin_4a 0.63 52.0 4.43e-01 100.0% 54.3%
4119008 305.2.1.1 a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin_4a 0.63 50.0 4.42e-01 100.0% 57.9%
5032609 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.63 46.0 4.37e-01 86.9% 65.3%
5017294 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.63 44.0 4.18e-01 90.2% 61.3%
4960747 305.2.1.1 a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin_4a 0.63 51.0 4.45e-01 98.4% 58.9%
4983119 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.62 47.0 4.23e-01 86.9% 57.3%
5047612 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.62 45.0 4.29e-01 85.2% 64.0%
5077049 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.62 43.0 4.09e-01 83.6% 60.0%
4621064 305.2.1.1 a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin_4a 0.62 50.0 4.45e-01 98.4% 61.1%
3375771 305.2.1.1 a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin_4a 0.62 52.0 4.41e-01 98.4% 56.2%
4609740 305.2.1.1 a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin_4a 0.61 49.0 4.30e-01 98.4% 57.9%
5035849 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.61 43.0 4.00e-01 86.9% 58.2%
3520850 304.151.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase 0.61 44.0 3.73e-01 78.7% 47.6%
4060228 305.2.1.1 a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin_4a 0.60 52.0 4.37e-01 100.0% 74.5%
4011868 327.16.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.60 45.0 4.21e-01 86.9% 66.7%
3429635 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.60 45.0 3.91e-01 82.0% 54.7%
4974602 304.57.1.1 a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 0.60 44.0 3.71e-01 82.0% 50.9%
4043118 305.2.1.1 a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin_4a 0.59 50.0 4.37e-01 100.0% 62.1%
3210821 327.16.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.59 44.0 4.16e-01 86.9% 66.7%
5016597 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.59 50.0 4.30e-01 100.0% 58.1%
4935008 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.58 43.0 3.98e-01 86.9% 61.3%
3727831 3012.1.1.1 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase 0.58 50.0 4.54e-01 98.4% 89.4%
3741533 181.1.1.14 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › ISN1 0.58 50.0 4.42e-01 98.4% 87.8%
198626 11.1.1.65 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CopC 0.56 44.0 3.88e-01 100.0% 56.7%
4593769 387.1.5.7 few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › SCRL 0.56 41.0 4.45e-01 88.5% 100.0%
4165721 304.8.1.21 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.56 41.0 3.95e-01 85.2% 70.0%
4926933 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 49.0 4.68e-01 100.0% 93.2%
4949617 210.1.3.0 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.55 43.0 3.09e-01 91.8% 28.6%
5053918 256.1.1.1 a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › Archease 0.55 40.0 4.07e-01 86.9% 83.3%
4946181 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.54 40.0 3.37e-01 86.9% 42.5%
3954005 256.1.1.0 a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like 0.54 40.0 4.06e-01 83.6% 88.3%
4558948 256.1.1.0 a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like 0.54 40.0 4.03e-01 83.6% 86.7%
3188905 4014.1.1.1 a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › DNA_topoisoIV 0.54 40.0 2.99e-01 82.0% 30.0%
5038167 256.1.1.1 a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › Archease 0.53 42.0 3.39e-01 88.5% 98.4%
394278 304.122.1.1 a+b two layers › Alpha-beta plaits › Nitrogen repressor-like proteins › Nitrogen repressor-like proteins › NRD1_2 0.52 40.0 3.79e-01 90.2% 87.0%
3582958 864.1.1.2 a+b two layers › DLC › DLC › DLC › Tctex-1 0.52 42.0 3.46e-01 93.4% 86.7%
4239859 387.1.5.7 few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › SCRL 0.51 37.0 3.78e-01 82.0% 91.7%