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ON456347.1__UTN92976.1__SEA_FINKLE_62__00062

Bact-Vir

ON456347.1__UTN92976.1__SEA_FINKLE_62__00062

Identity

Accession:
ON456347 ↗
Kingdom:
phage

Quality

83.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-81
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3r87A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.72 50.0 4.17e-01 72.7% 99.2%
1pn2D02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.70 47.0 4.02e-01 70.1% 94.4%
3kh8A02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.68 46.0 3.86e-01 70.1% 91.7%
2a5zA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.67 52.0 3.70e-01 84.4% 51.5%
3f1tB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.67 47.0 3.88e-01 74.0% 97.8%
3hslX00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.65 49.0 3.28e-01 79.2% 48.4%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.64 50.0 4.98e-01 84.4% 100.0%
3cqzH00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 41.0 3.60e-01 71.4% 44.0%
3htvA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 43.0 3.88e-01 72.7% 52.3%
1nycA00 2.40.310.10 Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors 0.62 44.0 3.93e-01 75.3% 79.3%
3s6pA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.61 52.0 4.26e-01 93.5% 81.7%
1wlgA02 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.61 53.0 4.41e-01 98.7% 72.9%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.60 51.0 3.61e-01 92.2% 83.4%
4agiA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.60 50.0 3.34e-01 92.2% 45.5%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 50.0 4.19e-01 93.5% 88.7%
3iujA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.59 51.0 3.34e-01 96.1% 39.7%
3v3sA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.59 49.0 3.47e-01 97.4% 67.3%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.57 47.0 3.18e-01 93.5% 34.3%
4ybvA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 40.0 3.54e-01 75.3% 86.8%
6g9sA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.57 50.0 3.31e-01 100.0% 78.1%
2eenA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.57 48.0 3.65e-01 92.2% 85.9%
3tufB00 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.57 46.0 3.59e-01 87.0% 47.5%
4ge1C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 50.0 3.76e-01 100.0% 46.6%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 49.0 4.07e-01 98.7% 64.8%
1eurA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.56 48.0 3.15e-01 97.4% 24.7%
5hp6A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 48.0 3.21e-01 100.0% 37.3%
3imhA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 48.0 3.18e-01 97.4% 94.9%
5hw3A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.55 47.0 3.37e-01 100.0% 79.9%
3dlbA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 42.0 3.28e-01 83.1% 100.0%
3flpA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 48.0 3.52e-01 100.0% 39.2%
3zxjA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 47.0 3.19e-01 100.0% 32.7%
2iteA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 45.0 3.97e-01 96.1% 78.5%
7qrlA01 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.54 45.0 3.76e-01 90.9% 59.3%
7vd7A01 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.54 38.0 3.60e-01 74.0% 62.0%
1ywuA00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.53 39.0 3.36e-01 76.6% 69.6%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.53 37.0 4.14e-01 89.6% 100.0%
4dy0B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 40.0 3.42e-01 83.1% 68.8%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.52 44.0 4.40e-01 100.0% 100.0%
1lshB00 2.20.90.10 Mainly Beta › Single Sheet › Lipovitellin-phosvitin complex; beta-sheet shell regions › Vitellinogen, beta-sheet shell domain 0.52 45.0 3.49e-01 97.4% 54.6%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.51 37.0 3.88e-01 85.7% 91.0%
6muwK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.51 39.0 2.93e-01 83.1% 87.7%
3dsbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 36.0 3.33e-01 75.3% 90.1%
1ixlA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 39.0 3.47e-01 90.9% 82.2%
2mj7A00 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.50 42.0 3.44e-01 90.9% 55.3%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3643256 708.1.1.9 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › CG-1 0.75 53.0 4.45e-01 74.0% 50.4%
3342641 708.1.1.9 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › CG-1 0.74 53.0 4.29e-01 75.3% 45.7%
3236101 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.73 45.0 4.15e-01 71.4% 48.0%
3645444 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 40.0 3.46e-01 71.4% 35.8%
4176400 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.70 43.0 4.38e-01 70.1% 62.7%
3960877 295.1.1.27 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF25991 0.69 46.0 4.81e-01 90.9% 75.7%
3804813 5.1.3.65 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.69 56.0 3.75e-01 88.3% 29.2%
3665166 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.67 55.0 3.66e-01 89.6% 29.2%
3420430 511.1.1.1 beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › HSP70 0.66 48.0 4.02e-01 77.9% 83.7%
3392704 11.1.1.538 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CHRD 0.66 55.0 4.72e-01 90.9% 84.2%
3169437 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.66 55.0 3.53e-01 92.2% 38.2%
3965735 274.1.1.5 a+b two layers › Pili subunits › Pili subunits › Pili subunits › YadA_anchor 0.66 46.0 4.52e-01 75.3% 67.1%
3404834 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.66 45.0 4.44e-01 87.0% 67.5%
3671149 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.65 55.0 3.51e-01 93.5% 35.9%
3266046 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.65 45.0 4.95e-01 71.4% 93.3%
3832022 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.65 51.0 3.39e-01 85.7% 31.9%
3191672 511.1.1.0 beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.65 45.0 3.91e-01 72.7% 100.0%
4293623 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.64 51.0 3.18e-01 88.3% 27.1%
3462291 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.64 51.0 3.40e-01 87.0% 28.9%
3716903 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.63 53.0 3.43e-01 93.5% 45.0%
3838507 4998.1.1.1 beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 0.63 55.0 4.27e-01 98.7% 74.9%
4207211 511.1.1.1 beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › HSP70 0.63 46.0 3.66e-01 77.9% 74.8%
3517016 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.63 48.0 3.23e-01 84.4% 26.9%
3510681 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 50.0 5.13e-01 96.1% 90.7%
3401376 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.62 51.0 3.36e-01 92.2% 31.4%
1322782 2484.5.1.1 mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RVT_connect 0.62 43.0 3.64e-01 72.7% 47.0%
4392509 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.62 43.0 3.11e-01 96.1% 24.9%
3390600 244.3.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.62 52.0 5.28e-01 96.1% 97.3%
3388794 71.2.1.0 beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like 0.62 52.0 3.65e-01 92.2% 52.1%
3110784 4056.1.1.4 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Head-tail_con 0.62 48.0 4.15e-01 84.4% 58.3%
5035584 375.1.1.31 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.61 47.0 4.69e-01 84.4% 85.0%
3623096 883.1.1.18 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › PF26545 0.61 53.0 3.93e-01 100.0% 80.0%
4257113 295.1.1.27 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF25991 0.61 44.0 4.66e-01 84.4% 85.7%
3784456 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.60 41.0 3.42e-01 71.4% 52.1%
1095153 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 49.0 3.16e-01 90.9% 32.4%
5018327 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.60 47.0 3.73e-01 89.6% 61.7%
4028798 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.60 51.0 4.06e-01 98.7% 92.1%
3947188 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 43.0 3.89e-01 76.6% 61.0%
3485926 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 48.0 2.67e-01 90.9% 7.0%
4135153 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.59 49.0 4.98e-01 100.0% 92.0%
3205174 5.1.4.245 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF7099 0.59 50.0 3.24e-01 96.1% 26.9%
5034238 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.59 47.0 3.64e-01 89.6% 60.0%
4680916 4998.1.1.1 beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 0.58 51.0 4.33e-01 100.0% 58.5%
3672558 5.1.4.222 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta_prop_At2g24240 0.58 50.0 3.26e-01 97.4% 38.7%
4039860 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.58 42.0 3.74e-01 81.8% 52.6%
4560456 4998.1.1.1 beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 0.58 51.0 4.22e-01 100.0% 65.0%
3783070 5.1.4.119 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rav1p_C 0.58 48.0 3.18e-01 94.8% 98.9%
3711360 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 46.0 3.19e-01 89.6% 42.1%
3545608 5.1.4.258 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2 0.58 50.0 3.22e-01 97.4% 25.3%
3592181 220.1.1.74 beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.57 47.0 3.91e-01 89.6% 63.7%
4459482 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.57 47.0 3.40e-01 89.6% 56.7%
3344355 5.1.4.227 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_At4g14310 0.57 44.0 2.86e-01 88.3% 37.1%
3302013 5.1.5.137 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_At4g14310 0.57 44.0 2.84e-01 88.3% 36.7%
3809146 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.57 43.0 4.15e-01 84.4% 78.9%
3469478 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.57 51.0 3.59e-01 100.0% 37.9%
3297744 5.1.4.45 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_3 0.56 47.0 2.91e-01 93.5% 71.8%
4011560 868.1.1.1 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.56 48.0 3.51e-01 94.8% 80.0%
3786550 5.1.4.219 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DPPIV_N 0.55 47.0 2.95e-01 97.4% 49.0%
3599881 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.54 46.0 3.77e-01 96.1% 50.3%
3399367 9.2.1.5 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › DUF7043 0.54 45.0 4.28e-01 94.8% 89.5%
5040016 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.54 48.0 3.85e-01 100.0% 63.2%
3924277 109.54.1.0 alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 0.53 45.0 2.57e-01 96.1% 13.8%
4024178 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 43.0 2.79e-01 90.9% 21.3%
4093456 222.1.1.12 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.53 42.0 3.31e-01 92.2% 63.8%
222972 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.52 43.0 4.15e-01 96.1% 87.6%
5023443 330.4.1.0 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 0.52 39.0 4.20e-01 87.0% 98.5%
4968133 4312.1.1.1 a+b two layers › RelE-like › RelE-like › RelE-like › BrnT_toxin 0.51 37.0 3.51e-01 77.9% 66.7%