←Back to structures
ON464759.1__UTV60875.1__JDFnp1_87__00087
Bact-VirON464759.1__UTV60875.1__JDFnp1_87__00087
Identity
- Accession:
- ON464759 ↗
- Kingdom:
- phage
Quality
74.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 16-231
Domain cluster:
representative
CATH (45)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1c2yA00 | 3.40.50.960 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase | 0.70 | 44.0 | 5.07e-01 | 85.2% | 85.8% |
| 2fgyA03 | 3.30.1330.140 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Carboxysome Shell Carbonic Anhydrase, C-terminal domain | 0.70 | 36.0 | 4.75e-01 | 95.4% | 90.6% |
| 8gr2A01 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.63 | 49.0 | 5.13e-01 | 79.2% | 96.9% |
| 1kblA04 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.62 | 45.0 | 3.81e-01 | 73.1% | 93.0% |
| 1efaA03 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 33.0 | 4.01e-01 | 96.8% | 77.6% |
| 7x0hC01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.61 | 32.0 | 3.99e-01 | 97.2% | 80.3% |
| 3egcD02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.61 | 31.0 | 3.86e-01 | 97.2% | 79.1% |
| 4nqrA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.60 | 33.0 | 3.82e-01 | 98.1% | 72.3% |
| 2o20A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.60 | 31.0 | 3.84e-01 | 98.1% | 77.4% |
| 3c3kA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.60 | 32.0 | 3.89e-01 | 98.6% | 79.0% |
| 1h65B00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 47.0 | 4.47e-01 | 82.4% | 77.3% |
| 3gpgA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.59 | 36.0 | 4.10e-01 | 96.8% | 79.0% |
| 1htwA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 33.0 | 3.79e-01 | 95.4% | 74.1% |
| 3fovA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.58 | 29.0 | 4.02e-01 | 97.7% | 99.0% |
| 3g1wA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 33.0 | 3.95e-01 | 97.7% | 81.5% |
| 4iqyB00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.58 | 37.0 | 3.72e-01 | 94.9% | 62.6% |
| 3kkeA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 32.0 | 3.78e-01 | 98.1% | 77.9% |
| 3oa5B02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.57 | 42.0 | 3.52e-01 | 75.9% | 87.7% |
| 4kqcA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 34.0 | 3.85e-01 | 95.8% | 76.9% |
| 3k4hA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 32.0 | 3.85e-01 | 82.9% | 82.4% |
| 5kivA01 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.56 | 38.0 | 4.05e-01 | 97.2% | 77.2% |
| 5ix8A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 34.0 | 3.86e-01 | 96.3% | 78.6% |
| 6whcA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 45.0 | 4.54e-01 | 83.8% | 83.6% |
| 6gt9A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 37.0 | 4.08e-01 | 96.8% | 82.8% |
| 3qk7C02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 31.0 | 3.71e-01 | 83.3% | 80.4% |
| 5ailA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.55 | 36.0 | 3.97e-01 | 98.1% | 78.3% |
| 1yr7A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 45.0 | 4.33e-01 | 85.6% | 96.3% |
| 3gxbA00 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.55 | 40.0 | 4.44e-01 | 81.5% | 92.7% |
| 2c2xA02 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.54 | 31.0 | 3.60e-01 | 84.7% | 77.3% |
| 1yd9B00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.54 | 37.0 | 3.93e-01 | 96.8% | 79.1% |
| 3no4A00 | 3.40.50.10310 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Creatininase | 0.53 | 45.0 | 4.22e-01 | 89.4% | 84.1% |
| 6feaB01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.53 | 36.0 | 4.25e-01 | 87.0% | 100.0% |
| 5f5nA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 47.0 | 4.26e-01 | 94.4% | 88.2% |
| 4f6cB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 48.0 | 3.98e-01 | 96.3% | 80.7% |
| 3nwjA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 40.0 | 4.24e-01 | 89.4% | 87.1% |
| 4rweA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 36.0 | 4.13e-01 | 100.0% | 94.3% |
| 2dgdA02 | 3.40.50.1860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 27.0 | 3.30e-01 | 94.4% | 77.5% |
| 1v8dC00 | 3.40.50.10360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Hypothetical protein TT1679 | 0.52 | 28.0 | 3.03e-01 | 72.2% | 58.0% |
| 1brwA02 | 3.40.1030.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain | 0.51 | 47.0 | 4.32e-01 | 97.2% | 93.4% |
| 3ua3A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 31.0 | 3.47e-01 | 80.1% | 74.6% |
| 3d8uB02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 34.0 | 4.02e-01 | 100.0% | 96.0% |
| 4d86A01 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.51 | 36.0 | 3.81e-01 | 98.1% | 80.3% |
| 4zjpA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 34.0 | 4.03e-01 | 100.0% | 100.0% |
| 3ksmA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.50 | 34.0 | 4.02e-01 | 99.5% | 100.0% |
| 2h3hB02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.50 | 32.0 | 3.73e-01 | 100.0% | 88.5% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4946557 | 2004.1.1.119 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Gtr1_RagA | 0.65 | 47.0 | 5.15e-01 | 80.6% | 89.4% |
| 4986567 | 2006.1.6.45 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › PF30231 | 0.63 | 47.0 | 4.82e-01 | 83.8% | 78.1% |
| 5019790 | 206.1.3.117 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PEP-utilizers_C | 0.62 | 45.0 | 3.05e-01 | 72.7% | 43.5% |
| 3601346 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.62 | 45.0 | 3.70e-01 | 73.1% | 85.7% |
| 3717757 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.60 | 46.0 | 4.59e-01 | 83.3% | 75.6% |
| 4013543 | 2003.1.6.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like | 0.59 | 47.0 | 4.33e-01 | 81.9% | 96.7% |
| 3579500 | 2004.1.1.119 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Gtr1_RagA | 0.59 | 46.0 | 4.63e-01 | 80.1% | 87.9% |
| 3951127 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.59 | 50.0 | 4.96e-01 | 94.4% | 86.2% |
| 3194024 | 2003.1.6.6 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Misat_Tub_SegII+Tubulin_3 | 0.58 | 47.0 | 4.53e-01 | 84.3% | 96.0% |
| 3941045 | 7529.1.1.0 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like | 0.57 | 38.0 | 4.29e-01 | 98.1% | 87.3% |
| 3071116 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.57 | 36.0 | 3.81e-01 | 96.8% | 69.2% |
| 4008847 | 7565.1.1.1 ↗ | a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase | 0.56 | 35.0 | 4.16e-01 | 97.2% | 91.0% |
| 4973306 | 7510.1.1.1 ↗ | a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Iso_dh | 0.56 | 34.0 | 4.00e-01 | 77.8% | 86.2% |
| 4864750 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.56 | 38.0 | 4.13e-01 | 96.8% | 82.0% |
| 3904589 | 2006.1.6.33 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_4 | 0.56 | 44.0 | 4.38e-01 | 83.8% | 78.2% |
| 4121942 | 2003.1.1.67 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_10 | 0.56 | 48.0 | 4.27e-01 | 92.1% | 91.0% |
| 5079404 | 2006.1.6.33 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_4 | 0.55 | 43.0 | 4.44e-01 | 81.9% | 93.3% |
| 3198846 | 2003.1.1.53 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA | 0.55 | 49.0 | 4.36e-01 | 94.9% | 89.3% |
| 1296447 | 2007.1.2.5 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Bmp | 0.54 | 34.0 | 4.12e-01 | 99.5% | 94.4% |
| 5071327 | 2002.1.1.105 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PEP-utilizers_C | 0.54 | 44.0 | 3.64e-01 | 86.1% | 90.0% |
| 3738765 | 7570.1.1.4 ↗ | a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › PF27239 | 0.54 | 37.0 | 4.09e-01 | 80.1% | 86.3% |
| 3739997 | 2002.1.1.189 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PRMT5_TIM | 0.53 | 39.0 | 3.68e-01 | 74.5% | 86.0% |
| 4335831 | 7544.1.1.1 ↗ | a/b three-layered sandwiches › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › Glycos_transf_3 | 0.52 | 45.0 | 4.21e-01 | 89.8% | 78.8% |
| 4139309 | 2007.1.14.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Oxidored_nitro | 0.52 | 35.0 | 3.94e-01 | 90.7% | 90.6% |
| 3719517 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 46.0 | 4.10e-01 | 95.4% | 85.7% |
| 3688145 | 7510.1.1.1 ↗ | a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Iso_dh | 0.51 | 35.0 | 3.86e-01 | 77.8% | 85.1% |
| 4423441 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.51 | 43.0 | 3.83e-01 | 88.9% | 87.0% |
| 3335913 | 2003.1.5.30 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_7 | 0.50 | 34.0 | 3.26e-01 | 81.5% | 56.9% |